Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04860 408 / 4e-146 DER2.2 DERLIN-2.2 (.1) AT4G21810 399 / 1e-142 DER2.1 DERLIN-2.1 (.1) AT4G29330 144 / 3e-42 DER1 DERLIN-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020053 [exp] 473 / 1e-171 AT4G04860 437 / 1e-157 DERLIN-2.2 (.1) Lus10018347 [exp] 449 / 3e-162 AT4G04860 446 / 2e-161 DERLIN-2.2 (.1) Lus10007664 [exp] 373 / 1e-132 AT4G04860 375 / 1e-133 DERLIN-2.2 (.1) Lus10034990 [exp] 142 / 4e-41 AT4G29330 347 / 2e-121 DERLIN-1 (.1) Lus10012934 [exp] 137 / 1e-38 AT4G29330 347 / 2e-120 DERLIN-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000900 [exp] 426 / 4e-153 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.004G018200 [exp] 424 / 3e-152 AT4G04860 410 / 7e-147 DERLIN-2.2 (.1) Potri.006G153000 [exp] 128 / 6e-36 AT4G29330 355 / 7e-125 DERLIN-1 (.1) Potri.004G233200 [exp] 125 / 1e-34 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 125 / 2e-34 AT4G29330 293 / 8e-100 DERLIN-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF04511 [flax] [poplar] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Lus10006771 pacid=23163535 polypeptide=Lus10006771 locus=Lus10006771.g ID=Lus10006771.BGIv1.0 annot-version=v1.0 ATGGCTCAGGCAGTTGAGGAATGGTACAAGCAGATGCCAGTCGTCACCCGCTCCTACCTCACCGCCGCCGTCGTCACCTCCATCGGCTGTTCCCTCGATA TCATAACTCCGTCTAATTTGTACTTGAACCCGAGGCTTGTAGTTCACAAGTATGAGTTCTGGCGCCTCATCACAAACTTCCTCTACTTCCGGAAAATGGA CTTGGATTTCATGTTTCACATGTTCTTCCTTGCACGGTACTGCAAGCTTCTGGAGGAGAACTCATTCAGAGGAAGAACAGCAGATTTCTTTTATATGCTT CTCTTCGGCGCTTCTGTTTTGACCGGCATTGTTCTCGTGGGTGGGATGATTCCTTACATTTCCGAGTCGTTTGCGAAGATAGTGTTTCTCAGCAATTCCT TGACATTCATGATGGTATATGTGTGGAGCAAGCAAAACCCTTTCATTCATATGAGCTTCTTGGGCCTTTTCACTTTCACAGCAGCTTATCTACCATGGGT TCTACTAGGATTTTCTGTCCTTGTTGGGGCTAGTGCCTGGGTTGATCTTTTGGGGATGATGGCGGGACACGCATACTACTTTCTTGAAGACGTTTACCCT CGGATGACTGGTCGACGCCCCCTGAGAACTCCATCGTTCATTAAAGCCTTGTTTGCAGATGATGACGCAGTCGTCATAGCACGACCAGCAAACGTCAGAT TTGCTCAGCCAGCTGCACCAGAGCTTCATGAAGATCGATGA
AA sequence Show only first row Show all	>Lus10006771 pacid=23163535 polypeptide=Lus10006771 locus=Lus10006771.g ID=Lus10006771.BGIv1.0 annot-version=v1.0 MAQAVEEWYKQMPVVTRSYLTAAVVTSIGCSLDIITPSNLYLNPRLVVHKYEFWRLITNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYML LFGASVLTGIVLVGGMIPYISESFAKIVFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMMAGHAYYFLEDVYP RMTGRRPLRTPSFIKALFADDDAVVIARPANVRFAQPAAPELHEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	0	1
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	1.4	0.8913
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	1.4	0.8786
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	3.5	0.8670
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	3.9	0.8568
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	4.0	0.8609
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	4.5	0.8468
AT1G33490			unknown protein		Lus10039157 [exp]	5.5	0.8561
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	6.0	0.8471
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	7.2	0.8372
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	9.5	0.7872

Compare expression of checked genes

Lus10006771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.