Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 81 / 1e-17 S-locus lectin protein kinase family protein (.1) AT1G11300 76 / 1e-15 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11410 76 / 1e-15 S-locus lectin protein kinase family protein (.1) AT1G11340 75 / 2e-15 S-locus lectin protein kinase family protein (.1) AT4G03230 71 / 7e-14 S-locus lectin protein kinase family protein (.1) AT1G11330 70 / 1e-13 S-locus lectin protein kinase family protein (.1.2) AT1G61610 67 / 1e-12 S-locus lectin protein kinase family protein (.1) AT4G27300 66 / 1e-12 S-locus lectin protein kinase family protein (.1) AT1G11350 65 / 5e-12 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G65800 64 / 7e-12 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020052 [exp] 160 / 4e-45 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014723 [exp] 107 / 9e-28 AT1G11340 255 / 7e-79 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 101 / 1e-24 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 101 / 2e-24 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 86 / 6e-19 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10013246 [exp] 84 / 2e-18 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030765 [exp] 80 / 2e-18 AT1G11340 88 / 1e-20 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 82 / 1e-17 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 81 / 1e-17 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028701 [exp] 87 / 2e-19 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036532 [exp] 84 / 3e-19 AT1G11340 247 / 6e-75 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 84 / 2e-18 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128900 [exp] 81 / 1e-17 AT4G27290 834 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 81 / 1e-17 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 81 / 1e-17 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 81 / 1e-17 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 80 / 3e-17 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 80 / 4e-17 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036612 [exp] 80 / 4e-17 AT4G27290 655 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006772 pacid=23163540 polypeptide=Lus10006772 locus=Lus10006772.g ID=Lus10006772.BGIv1.0 annot-version=v1.0 ATGATGATCCCATTATCACCACTCCTTTTCCTTCTCCTTCCACTCTGTTCATCGCTCCCGTCATCGTCGTCCGACACCCTAAAACCAAACAAACCCCTCC CAGACGGCGACGTTTTGGTCTCCGGCGGCCAAATTTTCGCCCTTGGCTTCTCCTCCCCTGATCAGCAAACCCCAATCCGCAGGTACCTCGGAATATGGTA CCACACTGTTTCACTGCAAACCGTCGTTTGGGTAGCCAACAGAGACACTCCTCTGAATGACACTTCCGGCCAGCTCACCGTCAGTTCAACCGGAAATCAC AACCGGGTTGAATTGGTTTGTTATGTCGTGGAAGTCGGAGAACGACCCCGGGACCGGTACAATTACGTATCGAATCGACCCGGCCGGTTACCCTCAGTTG TTTTTGTACAAGAATCACTTGGTTCCCTTATGGCGGATGGGTCCGTGGACCGGGATCCGGTGGAGCGGAGTTCCGGAGATTACATGCAATTTCATTTTCA ACGTGAGTTACGTAAACGACGACAAAAAGCTGTTTATAATGTACGGAGTCACGGTCGCCTCGATCCTGAAAAGGATGTACGTGGCGGAATCAGAGATGGT GAAGAGGGCCACGTGGATCGACCACGACCGTCGATAGAACGAGTTCTGGTACGCTCCTAA
AA sequence Show only first row Show all	>Lus10006772 pacid=23163540 polypeptide=Lus10006772 locus=Lus10006772.g ID=Lus10006772.BGIv1.0 annot-version=v1.0 MMIPLSPLLFLLLPLCSSLPSSSSDTLKPNKPLPDGDVLVSGGQIFALGFSSPDQQTPIRRYLGIWYHTVSLQTVVWVANRDTPLNDTSGQLTVSSTGNH NRVELVCYVVEVGERPRDRYNYVSNRPGRLPSVVFVQESLGSLMADGSVDRDPVERSSGDYMQFHFQRELRKRRQKAVYNVRSHGRLDPEKDVRGGIRDG EEGHVDRPRPSIERVLVRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10006772 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	1.0	0.9260
AT1G11340			S-locus lectin protein kinase ...		Lus10007611 [exp]	1.7	0.9127
AT1G53430			Leucine-rich repeat transmembr...		Lus10017953 [exp]	3.5	0.8817
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	3.5	0.9241
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	3.9	0.9045
AT5G26620			unknown protein		Lus10001512 [exp]	6.9	0.8718
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	7.5	0.9112
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	11.2	0.8776
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	12.7	0.8789
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	14.0	0.8675

Compare expression of checked genes

Lus10006772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.