Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61900 424 / 3e-147 unknown protein AT2G30700 271 / 5e-87 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020048 [exp] 638 / 0 AT1G61900 479 / 5e-169 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003000 [exp] 489 / 2e-172 AT1G61900 521 / 0.0 unknown protein Potri.004G016000 [exp] 482 / 9e-170 AT1G61900 524 / 0.0 unknown protein Potri.007G133800 [exp] 267 / 2e-85 AT2G30700 608 / 0.0 unknown protein Potri.017G018000 [exp] 266 / 6e-85 AT2G30700 614 / 0.0 unknown protein Potri.007G133733 [exp] 157 / 1e-45 AT2G30700 298 / 9e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006773 pacid=23163562 polypeptide=Lus10006773 locus=Lus10006773.g ID=Lus10006773.BGIv1.0 annot-version=v1.0 ATGGATGGAGGAGTTTCTCTCAACTGGCTCGTTCTAGCTGTTGCTCCTTTTCTGCTTCTTTTGAGAGAATGCATGTTGAACTTTACTGCTGCTGAAACTT TGATGAGCACAACATCCATAGACTGTTCGGCCTTTTTCGCTCCTCTACTGGCTAATGTCATATGTTGTCCTCAGCTGGAAGCCACACTTACCATCCTTAT AGGCCAAGCAAGTAAATCCAGCAATTTGCTTGCATTAAGTAGCAATGCGTCAAGGTATTGCCTTTCGGACATTGAACAAATGTTGATCGGTCAGGGTGCT GCGGGCAATCTCAGAAGGATATGCTCCATTCATCATTCTAGCCTCACCCAAGGGGCTTGTCCGGTTAAGGATGTGGAGGAATTTGAGAAATCTGTGGAAT CATCAAACCTTCTTGCAGCTTGTAAAAATGTTGATCCGGTCAAGGAATGTTGCGAAGAGGTTTGTCAAAATGCTATTTCCGAAGCTGCTGTGAAAATCGC AGGAGAAGCTTCTGAAATTTCCACTCTAGATTCTCCTAGTGTCTTGCGTAGGAACTCGACCAGAATTGGTGATTGCAAAAGTATCGTGTTACGTTGGCTT GCAAGTAAGCTGGATCATTCAAGGGCAAATGAGGTTCTTAGGAGGCTAACCAATTGCAATGTCAATAAAGTTTGCCCTCTGGTTTTCCCTAACATGAAAC ATGTTGCGAAGGGATGTAGCAGTACGATACATAATCAAACAGAATGTTGTCAGGCGATGGACAGCTACGTTTCTCACTTGCAGAAGCAGAGCCTTATCAC CAATCTGCAAGCTTTGGATTGCTCTACTACACTTGCTATGAAGCTCCAGAAATCAAATATCACCAGCGATATCTATAGCCTGTGTCACATAAGTCTCAAA GATTTCTCACTCCAAGCTCTTAACTTCAATAGACTCATTGAGCTTCTTCGTGGTCTTGAAACAGAATCTGGATGCCTCTTACCAAGTTTGCCATCTGATG CAACTTTTGACCAGTCTTCGGGGATCAGCTTCATCTGTGATCTAAATGACAATATTCCAGCACCATGGCCCTCTTCTTCATCCCAATTGTCAGCATCACA TTGCAACAAAACTATCAAAATCCCAGCACTTCCTGCTGCAGCATCTTCTTCTCAAAATGGTTAG
AA sequence Show only first row Show all	>Lus10006773 pacid=23163562 polypeptide=Lus10006773 locus=Lus10006773.g ID=Lus10006773.BGIv1.0 annot-version=v1.0 MDGGVSLNWLVLAVAPFLLLLRECMLNFTAAETLMSTTSIDCSAFFAPLLANVICCPQLEATLTILIGQASKSSNLLALSSNASRYCLSDIEQMLIGQGA AGNLRRICSIHHSSLTQGACPVKDVEEFEKSVESSNLLAACKNVDPVKECCEEVCQNAISEAAVKIAGEASEISTLDSPSVLRRNSTRIGDCKSIVLRWL ASKLDHSRANEVLRRLTNCNVNKVCPLVFPNMKHVAKGCSSTIHNQTECCQAMDSYVSHLQKQSLITNLQALDCSTTLAMKLQKSNITSDIYSLCHISLK DFSLQALNFNRLIELLRGLETESGCLLPSLPSDATFDQSSGISFICDLNDNIPAPWPSSSSQLSASHCNKTIKIPALPAAASSSQNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61900			unknown protein		Lus10006773 [exp]	0	1
AT1G61900			unknown protein		Lus10020048 [exp]	1.4	0.8592
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015833 [exp]	2.8	0.8505
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10037943 [exp]	4.5	0.8445
AT5G64460			Phosphoglycerate mutase family...		Lus10032819 [exp]	6.7	0.8002
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	6.7	0.8439
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	9.2	0.8039
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	11.1	0.8456
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	11.5	0.8383
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023229 [exp]	12.7	0.7954
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	14.0	0.7893

Compare expression of checked genes

Lus10006773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.