Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21920 62 / 6e-13 unknown protein AT3G20340 51 / 4e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001143 [exp] 99 / 1e-27 AT4G21920 66 / 9e-15 unknown protein Lus10002068 [exp] 80 / 5e-20 AT4G21920 65 / 1e-14 unknown protein Lus10021518 [exp] 52 / 2e-09 AT3G20340 71 / 7e-17 unknown protein Lus10021358 [exp] 41 / 6e-05 AT3G10120 122 / 2e-35 unknown protein Lus10017035 [exp] 39 / 0.0006 AT3G10120 119 / 7e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015900 [exp] 82 / 4e-21 AT4G21920 55 / 1e-10 unknown protein Potri.011G003100 [exp] 69 / 7e-16 AT3G20340 60 / 1e-12 unknown protein Potri.011G139400 [exp] 49 / 3e-08 AT3G20340 47 / 5e-08 unknown protein Potri.001G435400 [exp] 39 / 0.0001 AT3G20340 42 / 1e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006774 pacid=23163553 polypeptide=Lus10006774 locus=Lus10006774.g ID=Lus10006774.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCTGCAAGGGAGGACTCTCGTCGGCGGCGGAACACGACGACGACGAATGGGCCCAATTACCTCTGTCCCAGAGTCACAAAAGTACCGTTC TTTTCGACGCAGCTTCTAATTCCGACAAGAACAGGCTACTTCCGGTTTCTTCCACGTCATCTTCGGCAAGAGATCAGCAGGTGAAGATCAAGGTGTCAAA GAGGGAGCTGGAAGAGTTAATTTCTCGAATCGAGAAGCAGGGTTTGTCCTCCCAGCAGATACTGGCTCGGTTAATCCTCTCCGGCGGGGGCGATCAGTTT CGCGGGCTATTTGGACAAGTTGACGAAGACGATCGGCGGTGCTGGAAGCCTGTTCTACAGAGCATTCCGGAGGTCAACTGTGCGTCCGATTCGTTTGATT GTTGTTAA
AA sequence Show only first row Show all	>Lus10006774 pacid=23163553 polypeptide=Lus10006774 locus=Lus10006774.g ID=Lus10006774.BGIv1.0 annot-version=v1.0 MGNCCKGGLSSAAEHDDDEWAQLPLSQSHKSTVLFDAASNSDKNRLLPVSSTSSSARDQQVKIKVSKRELEELISRIEKQGLSSQQILARLILSGGGDQF RGLFGQVDEDDRRCWKPVLQSIPEVNCASDSFDCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21920			unknown protein		Lus10006774 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	1.0	0.9512
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	5.3	0.9181
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	6.7	0.9268
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	11.4	0.9434
AT4G36590	MADS		MADS-box transcription factor ...		Lus10042291 [exp]	12.6	0.8788
AT3G17940			Galactose mutarotase-like supe...		Lus10005808 [exp]	15.3	0.9310
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	16.7	0.9078
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	16.7	0.9215
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	18.9	0.9269
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	19.1	0.9103

Compare expression of checked genes

Lus10006774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.