Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04720 757 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 727 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT3G20410 726 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G50700 723 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT1G61950 689 / 0 CPK19 calcium-dependent protein kinase 19 (.1) AT1G76040 672 / 0 CPK29 calcium-dependent protein kinase 29 (.1.2) AT4G04740 660 / 0 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT5G12180 648 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 643 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G23650 622 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020046 [exp] 1001 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 739 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 736 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 722 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 695 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10005619 [exp] 668 / 0 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10038460 [exp] 643 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 639 / 0 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 638 / 0 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003400 [exp] 770 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G015500 [exp] 759 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.002G017000 [exp] 680 / 0 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 672 / 0 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.001G097400 [exp] 652 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 648 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.009G069200 [exp] 644 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G274700 [exp] 636 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.010G244800 [exp] 583 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 581 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10006777 pacid=23163577 polypeptide=Lus10006777 locus=Lus10006777.g ID=Lus10006777.BGIv1.0 annot-version=v1.0 ATGGGATGTTCCAGTAGCAAAGGACCACACTCGCCTTCTTCCTCTTCCAAGCCAGAATCCAACGGCTACACACCTCCCACCGCCTACCAACGCCACAACC AGCAACGTCAGCCTCAATACGACTACGTTCAACCACCTCCTCCTCCGCCGCCGCCGCCCACTAAAAGGACCGTCAAGAAGCCGGAGACTATATTAGGGAA GCCATTCGAGGACATCACGCAGTTCTACACGCTGGGTAAAGAACTGGGTCGGGGCCAATTCGGCATTACTTACCTCTGCACGGAGAATTCCACGGGGGAA AACTACGCCTGCAAGACGATACTTAAAAGAAAATTGGGGAGCAAGAGCGATAGAGAAGACGTTAGGAGGGAGATTAAGATTATGCAGCACCTTTCTGGTC AGCCTAACATTGTCGAATTCAGAGGCTGTTACGAGGAGAGGCTTGCGGTTCATTTGGTGATGGAGCTTTGCGCCGGCGGGGAGCTATTTGATCGGATTAT TACGAAAGGTCATTACTCCGAAAAGGACGCTGCCAAGATTTGCAGGGAGATTGTGAATGTTGTCCACGCTTGCCATTTTATGGGGATTATGCATCGTGAT CTCAAGCCTGAGAATTTCTTGTTTGATTCCTCTGATGAACTTGCTACTCTTAAGGCCACTGATTTTGGACTCTCTGTCTTCACTCAAGATGGCAAAGTTT ACGGAGACATGTTGGGAAGTGCATACTACGTTGCTCCAGAAGTGTTGCGACGAAGTTATGGGAAGGAGATCGATATTTGGAGCGCCGGAGTTATTATGTA CATTCTTCTCACTGGCGTGCCTCCATTCTGGGGAGATAATGAGAAGGGGATATTTGATTCCATTCTTAATGGACATGTCGATTTCGAAAGTGAACCCTGG CCGTCCATATCTGAAAGTGCCAAAGATCTGATTAGGAAGATGCTCATTCAGGACCCAAAGAAACGTTTAACTTCCGCACAGATTCTAGAGCATCCATGGA TCAAGGGTGGTGCAGCATCAGATAAACCTATAGGTAGCGCAGTAGTATCCAGAATTAAGCATTTCAGGGCAATGAACAATATGAAGAAGCTTGCCCTGAA GGTTATAGCTGCGAATCTGTCTGAAGAAGAGATTAGAGGTCTAAACACAGTGTTTATGAACCTGGACACTGACCAGAGTGGTACGATTACCTTTGAAGAA CTGAAGATAGGTTTGGCTCGATTGGGATCGAAGCTATCCGAAACTGAGGTTAAGCAACTCATGGAAGCGGCTGATATAGATGGAAATGGAACCATCGACT ACTCGGAGTTCATCTCTGCAACAATGCACAGATATAGGCTTGAAAAAAATGAGCATCTGTACAAAGCATTTCAGCACTTTGATAAAGATGGTAGTGGGTA TATAACAAGAGAGGATCTAACAAACGCAATGGTGGAGTACGGAATAGGGGATGAAGCCAACGTTATGGACATCATCGACGAGGTCGATACAGACCATGAT GGAAGAATCAACTACGACGAATTCTGTGTGATGATGAGAAGTGGGTCAGAGGTTCAACCACTACCTTTCGCAGATCCTTAG
AA sequence Show only first row Show all	>Lus10006777 pacid=23163577 polypeptide=Lus10006777 locus=Lus10006777.g ID=Lus10006777.BGIv1.0 annot-version=v1.0 MGCSSSKGPHSPSSSSKPESNGYTPPTAYQRHNQQRQPQYDYVQPPPPPPPPPTKRTVKKPETILGKPFEDITQFYTLGKELGRGQFGITYLCTENSTGE NYACKTILKRKLGSKSDREDVRREIKIMQHLSGQPNIVEFRGCYEERLAVHLVMELCAGGELFDRIITKGHYSEKDAAKICREIVNVVHACHFMGIMHRD LKPENFLFDSSDELATLKATDFGLSVFTQDGKVYGDMLGSAYYVAPEVLRRSYGKEIDIWSAGVIMYILLTGVPPFWGDNEKGIFDSILNGHVDFESEPW PSISESAKDLIRKMLIQDPKKRLTSAQILEHPWIKGGAASDKPIGSAVVSRIKHFRAMNNMKKLALKVIAANLSEEEIRGLNTVFMNLDTDQSGTITFEE LKIGLARLGSKLSETEVKQLMEAADIDGNGTIDYSEFISATMHRYRLEKNEHLYKAFQHFDKDGSGYITREDLTNAMVEYGIGDEANVMDIIDEVDTDHD GRINYDEFCVMMRSGSEVQPLPFADP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	0	1
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10006776 [exp]	1.0	0.9603
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	2.2	0.8902
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	4.5	0.8707
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	4.6	0.8749
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10006166 [exp]	6.3	0.8919
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	7.6	0.9120
AT2G21180			unknown protein		Lus10026283 [exp]	7.9	0.8277
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	12.4	0.8625
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	13.1	0.8321
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10010737 [exp]	13.4	0.8461

Compare expression of checked genes

Lus10006777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.