Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21960 516 / 0 PRXR1 Peroxidase superfamily protein (.1) AT2G37130 369 / 3e-128 Peroxidase superfamily protein (.1.2) AT5G40150 208 / 6e-65 Peroxidase superfamily protein (.1) AT2G18140 201 / 6e-62 Peroxidase superfamily protein (.1) AT3G50990 198 / 6e-61 Peroxidase superfamily protein (.1) AT2G24800 197 / 2e-60 Peroxidase superfamily protein (.1) AT2G18150 196 / 3e-60 Peroxidase superfamily protein (.1) AT1G71695 195 / 1e-59 Peroxidase superfamily protein (.1) AT4G36430 194 / 3e-59 Peroxidase superfamily protein (.1) AT3G28200 192 / 4e-59 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020045 [exp] 601 / 0 AT4G21960 490 / 6e-176 Peroxidase superfamily protein (.1) Lus10015074 [exp] 376 / 1e-130 AT2G37130 498 / 5e-179 Peroxidase superfamily protein (.1.2) Lus10027163 [exp] 199 / 2e-61 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10041784 [exp] 198 / 5e-61 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10039681 [exp] 196 / 5e-60 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10009898 [exp] 193 / 3e-59 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10010716 [exp] 193 / 6e-59 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10027164 [exp] 192 / 7e-59 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 190 / 6e-58 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015300 [exp] 565 / 0 AT4G21960 538 / 0.0 Peroxidase superfamily protein (.1) Potri.006G129900 [exp] 378 / 1e-131 AT2G37130 489 / 2e-175 Peroxidase superfamily protein (.1.2) Potri.012G076500 [exp] 204 / 2e-63 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 203 / 4e-63 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 202 / 1e-62 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 197 / 1e-60 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 197 / 1e-60 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 197 / 1e-60 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 197 / 1e-60 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 196 / 5e-60 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10006778 pacid=23163542 polypeptide=Lus10006778 locus=Lus10006778.g ID=Lus10006778.BGIv1.0 annot-version=v1.0 ATGGAGCATCACAAAGCTCTCTTCTTCTTGTGCTTGTTATCCTTAGCAGTCTCAGCATTTGCTCAACAAGAGTCCGTCAGCAATGAAGAAACCAAAACAA CAGGGCTAGTGATGGACTTCTACAAGGACAGCTGCCCTCAAGCAGAGGACATAATCAGAGAGCAAGTCAAGCTTCTTTACAAGAGGCACAAGAACACTGC TTTCTCTTGGCTCAGAAACATCTTCCATGACTGCGCTGTTCAGTCGTGTGATGCATCCCTGCTGTTGGATTCAACGAGGAGGTCTCTGTCTGAAAAGGAG ACAGACAGGAGCTTTGGTCTGAGGAATTTCAGGTACCTTGACACCATCAAAGAAGCTGTGGAGAGGGAATGCCCTGGAGTTGTTTCTTGTGCCGACATTC TTGTCCTCTCCGGTAGAGATGGCATCGTTGCGTTGGGAGGACCACACATACCACTAAAAACAGGAAGAAGGGATGGAAGGAAGAGCAGAGCAGAAATCCT TGAGGAATACCTTCCAGATCATAATGAGAGCATGTCTGTAGTCCTTGACAGGTTTGCCGCCATGGGGATCGATACTCCTGGACTCGTTGCTTTGTTAGGG TCACACAGCGTGGGAAGAACCCACTGCGTGAAGCTGGTTCATCGTCTGTACCCAGACGTCGACCCAGCTTTGAACCCTGACCATGTCGACCACATGCTCA AGAAGTGCCCCGACGCGATCCCAGACCCGAAGGCAGTGCAGTACGTGCGAAATGACCGTGGCACCCCTATGATTCTGGACAACAACTACTACAGGAACAT ACTTGAGAACAAAGGGCTGTTGATCGTAGATCACCAGCTTGCTACCGACAATAGGACTAAGCCTTACGTGAAGAAGATGGCTAAGAGCCAGGACTACTTC TTCAAGCACTTCGCCAGGGCAATCACCAAGCTTTCAGAGAACAACCCCCTCACTGGAGATAAGGGTGAGATTAGGAGGCAGTGCAGCGTTGTCAACAAGA TGATCCATTGA
AA sequence Show only first row Show all	>Lus10006778 pacid=23163542 polypeptide=Lus10006778 locus=Lus10006778.g ID=Lus10006778.BGIv1.0 annot-version=v1.0 MEHHKALFFLCLLSLAVSAFAQQESVSNEETKTTGLVMDFYKDSCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRSLSEKE TDRSFGLRNFRYLDTIKEAVERECPGVVSCADILVLSGRDGIVALGGPHIPLKTGRRDGRKSRAEILEEYLPDHNESMSVVLDRFAAMGIDTPGLVALLG SHSVGRTHCVKLVHRLYPDVDPALNPDHVDHMLKKCPDAIPDPKAVQYVRNDRGTPMILDNNYYRNILENKGLLIVDHQLATDNRTKPYVKKMAKSQDYF FKHFARAITKLSENNPLTGDKGEIRRQCSVVNKMIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	0	1
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10014194 [exp]	1.7	0.9113
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	2.0	0.9191
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	2.6	0.9217
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	4.2	0.9034
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	6.9	0.8887
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024935 [exp]	8.9	0.8903
					Lus10040811 [exp]	9.2	0.9060
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10016742 [exp]	9.8	0.8857
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10010143 [exp]	10.2	0.8695
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	11.0	0.9051

Compare expression of checked genes

Lus10006778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.