Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11720 1461 / 0 ATSS3 starch synthase 3 (.1.2) AT4G18240 429 / 2e-132 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT3G01180 207 / 3e-55 ATSS2 starch synthase 2 (.1) AT5G24300 186 / 4e-49 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 180 / 2e-47 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT5G65685 122 / 6e-29 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020044 [exp] 2050 / 0 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10023319 [exp] 416 / 8e-128 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 414 / 5e-127 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 407 / 4e-124 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 402 / 8e-121 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10018116 [exp] 203 / 1e-54 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 202 / 1e-54 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 200 / 4e-53 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 192 / 1e-50 AT3G01180 928 / 0.0 starch synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014100 [exp] 1592 / 0 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.001G351800 [exp] 424 / 3e-130 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 361 / 1e-111 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.017G084100 [exp] 206 / 3e-55 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 189 / 4e-50 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 186 / 3e-49 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G009600 [exp] 172 / 5e-44 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G449500 [exp] 167 / 7e-43 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G079450 [exp] 49 / 3e-07 AT4G18240 77 / 1e-18 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0576 [flax] [poplar] STARBD PF03423 [flax] [poplar] CBM_25 Carbohydrate binding domain (family 25) CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10006780 pacid=23163573 polypeptide=Lus10006780 locus=Lus10006780.g ID=Lus10006780.BGIv1.0 annot-version=v1.0 ATGGAAGTCAGTTTGCAAGTGCAAAGGTCGCTCACTTCTTGCAGAAGAGCTAGCTCTCATGATAAACCTCGTTTCAAGATCACACCTTTTTCTGGGTCTG GGTTTTTCTCTCCTCTCAGATCCACCACTCATTTCATCAGTCTGGCAGCTTGGTGCAATGAGCATCCTTCTTCATCTGGCTTTTCATTGCAAGTCACTGC CAGTGCCGAATTCTCTGGAAGAAAAGGTAAAAAATTGTCCAGTGGGAGGCCTAAAACCTCAGCCCCAAAGGGGTTTGTGCCAAAAACATCTTCAGTATGG AGAAAAGAACAAAAGCAATATGGAAATAAGAACGATGCAGATGATCGTTCTCCAGACAAGCATGTTGAGAATGTGAAGACGGTGCAGGATGGATCAAAAA CCGCTAGAAAGGTAACAGTTACTGAGACCAGTCTACCCATGGAGAATGGAAGTGTTGGTACCAATGAGAGCAATGAAACTAGTTTAGGCGAGACACATTT CGATGATTTAGTAGACGGGGAGGCTGATAGTACAATTGACAAAGCAAAGGAAGAAGCTTTCCTTGCATTGAAGTTGGAAAGTGAAGAAAACTTGAGAAGG CAAGAAATCGAGGTGCTTGCTGAAAAGAGCTTCTCCAAGGGGGTGAAGATGTTTGTTTATCCTCAGGTTGTTAACCCTGATCAAGAGGTGGAGGTATTCC TTAACAGGAGACTCTCTAGTCTTGTTAATGAGCCTGAGATTCTAGTTATGGGAGCTTTTAATGACTGGAAATGGAAGTCCTTTACGGCAAGATTGAGTAA AACCCATCTGAGAGAGGATTGGTGGTCTTGCTGCATTCACGTTCCCAAGGAAGCGTATAAGATAGACTTTGTGTTCTTCAACGGACGGGATGTGTATGAT AACAATGGAAGAAAGGACTACTGTCTGCCCGTGGAAGGTGGGATGGATGAATTTGCATTTGAGGATTTTTTGCTCGAGGAAAAACAGAGGGAGCTAAAGA GACTCGCTGAAGAGAATGCCGAGAAGGAAAGAAGGGTTGAAGAACAGCGGCGAATGGAAGCAGAGATGGCTGCAAGGGAAGCTGATAGACTTCAAGCAAA GACGGAAACTGAGAAGAGGCGTCAATCGTTGCAAAAAGTAATGAAAAGGGCTGTAAGATCAGTTGAAAATGTTTGGTTCATAGAGCCTCGTGAGTTCAAA GGACTGGACAGAGTCAGGCTATTCTATAACAAAAGCTCAGGTCCACTTGCTCATTCCAATGATCTCTGGATACACGGAGGCCATGACAACTGGAATGGTG GATTGTCCATTGTTCAAAAGTTTGCCAAGTTTGAGAGGAAGAAGGATGGTGACTGGTGGTATACGAATGTCGTTGTTCCTGATGGAGCCCTCGTCTTAGA CTGGGTGTTTGCTGATGGTCCCCCCCAAAATGCTGCTGTTTATGATAATAATCATTTGCAAGATTTCCATGCGATTGTCCCAAACAACATTCCTGAAGAC GTGTATTGGGTAGAGGAGGAACACAAGTTATATAGAAAGCTACAGGAGGAGAGGAGGGGAAGAGAAAAGGCTCTACATGCGAAGGCTGAAAAGACACGAC GCATGAAAGCTGAAACAAAGGAAAGAACACTGAGGAGGTTTCTGCTCTCGCAGAAGCACATATTCTATACTGAACCACTTGATGTCCAGGCTGGAAGTGA CGTCACAGTCTTTTACAATCCTGCAAACACGGTACTGAATGGAAAATCAGAAGTTTGGTTCAGAGGGTCTTTTAATCGATGGACACACCGCAAGGGGCCA TTGCCACCTCAGAAAATGTTGCTTGCTGACGATGGTTTGCATGTCAAAACCACTGTGAGGGTGCCTCTGGATGCATACATGATGGATTTTGTGTTCTCTG ACAAGGAAGATGGGGGGACCTTTGACAACAGAGACCGCATGGATTACCATGTTCCTGTTCTTGGAGGAATCGCAAAGGAGTCACCTATGAATATTGTGCA TATAGCCGTTGAAATGGCTCCCATTGCAAAGGTTGGAGGACTTGGTGATGTTGTGACTAGTCTGTCTCGTGCTGTTCAAGATTTAAACCACAATGTGAAC ATCATTCTACCAAAGTATGACTGCTTGAAACTTAATCATGTGAAAGACCTTCAATTCCACCGAAGCTATTCGTGGGGAGGCACTGAAATAAAAGTATGGC TTGGGAAAGTGGAAGGCGTATCTGTCTATTTCTTGGAGCCTCAGAATGGTATGTTTTGGACAGGCTGTATATATGGATGCCGTAATGATGGGGAGAGATT TGGTTTCTTTTGCCATGCAGCTCTTGAATTCTTACTTCAAAGTGGATCTCATCCTGATATTATCCACTGTCATGATTGGTCCAGTGCTCCAGTGGCATGG TTGTTCAAGGACCATTACGTGCACTATGGTCTTAGTAAAGCTCGCATCGTGTTCACTATTCACAACCTCGAGTTTGGGGCTCAAAACATTAGCAAAGCCA TGGCTTACTCTGACAAGGCTACAACTGTATCTCCCACGTACGCAACAGAGGTTGCTGGGAATGGTGCAGTTGCCCCACATTTATACAAGTTCCATGGCAT ACTAAACGGAATAGACCAAGATATATGGGATCCTTACAATGATCAATTCATTCCTGTACATTACACTTCTGAGAATGTTATTGAAGGCAAAAGAGCTGCC AAGGAAGCCCTACAAGAGAGGCTTGGTTTGAAGAGGGCCGATCTCCCTCTAGTGGGTATCATTACTCGTTTAACACACCAGAAAGGAATTCATCTCATCA AACATGCAATTTGGCGTACCTTAGAACGGGGCGGACAATTAGTGCTACTCGGCTCAGCTCCAGATCCTCGGATACAGAACGATTTTGTGGGTCTGGCCAA CCTGTTGCATTCCAAACATGGAGACCGGGCTCGCCTTCTTTTGACATATGACGAGCCTCTTTCGCATTTGATCTATGCTGGATCAGACTTCATGTTGGTT CCTTCCATATTCGAGCCATGTGGATTGACACAACTTACAGCCATGAGATATGGTACAATACCTGTTGTCCGAAAGACCGGAGGACTGTTCGACACTGTGT TTGATGTGGACGACGATAAAGAAAGGGCACAATCTCAAGGCATTGAACCAAATGGTTTCAACTTCGAAGGAGCAGACACTCCGGGTGTCGACTATGCCCT AAATAGGGCCATTTCTGCCTGGTACGATGGTCGGGACTGGTTCAACACATTATGTAAAACAGTCATGGAGCAAGATTGGTCATGGAATAAGCCAGCTCTT GACTACATGGAGCTTTACCACTCTGCCCGGAAGTGA
AA sequence Show only first row Show all	>Lus10006780 pacid=23163573 polypeptide=Lus10006780 locus=Lus10006780.g ID=Lus10006780.BGIv1.0 annot-version=v1.0 MEVSLQVQRSLTSCRRASSHDKPRFKITPFSGSGFFSPLRSTTHFISLAAWCNEHPSSSGFSLQVTASAEFSGRKGKKLSSGRPKTSAPKGFVPKTSSVW RKEQKQYGNKNDADDRSPDKHVENVKTVQDGSKTARKVTVTETSLPMENGSVGTNESNETSLGETHFDDLVDGEADSTIDKAKEEAFLALKLESEENLRR QEIEVLAEKSFSKGVKMFVYPQVVNPDQEVEVFLNRRLSSLVNEPEILVMGAFNDWKWKSFTARLSKTHLREDWWSCCIHVPKEAYKIDFVFFNGRDVYD NNGRKDYCLPVEGGMDEFAFEDFLLEEKQRELKRLAEENAEKERRVEEQRRMEAEMAAREADRLQAKTETEKRRQSLQKVMKRAVRSVENVWFIEPREFK GLDRVRLFYNKSSGPLAHSNDLWIHGGHDNWNGGLSIVQKFAKFERKKDGDWWYTNVVVPDGALVLDWVFADGPPQNAAVYDNNHLQDFHAIVPNNIPED VYWVEEEHKLYRKLQEERRGREKALHAKAEKTRRMKAETKERTLRRFLLSQKHIFYTEPLDVQAGSDVTVFYNPANTVLNGKSEVWFRGSFNRWTHRKGP LPPQKMLLADDGLHVKTTVRVPLDAYMMDFVFSDKEDGGTFDNRDRMDYHVPVLGGIAKESPMNIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVN IILPKYDCLKLNHVKDLQFHRSYSWGGTEIKVWLGKVEGVSVYFLEPQNGMFWTGCIYGCRNDGERFGFFCHAALEFLLQSGSHPDIIHCHDWSSAPVAW LFKDHYVHYGLSKARIVFTIHNLEFGAQNISKAMAYSDKATTVSPTYATEVAGNGAVAPHLYKFHGILNGIDQDIWDPYNDQFIPVHYTSENVIEGKRAA KEALQERLGLKRADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQLVLLGSAPDPRIQNDFVGLANLLHSKHGDRARLLLTYDEPLSHLIYAGSDFMLV PSIFEPCGLTQLTAMRYGTIPVVRKTGGLFDTVFDVDDDKERAQSQGIEPNGFNFEGADTPGVDYALNRAISAWYDGRDWFNTLCKTVMEQDWSWNKPAL DYMELYHSARK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	0	1
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	3.5	0.7771
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038018 [exp]	4.2	0.7099
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	6.8	0.7751
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	10.5	0.6767
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10021224 [exp]	11.9	0.7598
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	18.5	0.6990
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10010365 [exp]	19.4	0.6637
AT3G23940			dehydratase family (.1.2)		Lus10032616 [exp]	26.2	0.6884
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	31.5	0.6631
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	33.2	0.7147

Compare expression of checked genes

Lus10006780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.