Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04630 116 / 4e-33 Protein of unknown function, DUF584 (.1) AT4G21970 112 / 6e-32 Protein of unknown function, DUF584 (.1) AT3G45210 81 / 1e-19 Protein of unknown function, DUF584 (.1) AT1G11700 77 / 7e-18 Protein of unknown function, DUF584 (.1) AT5G60680 69 / 4e-15 Protein of unknown function, DUF584 (.1) AT1G61930 69 / 8e-15 Protein of unknown function, DUF584 (.1) AT4G26950 67 / 2e-14 Protein of unknown function, DUF584 (.1.2) AT3G15040 67 / 1e-13 Protein of unknown function, DUF584 (.1) AT2G28400 65 / 2e-13 Protein of unknown function, DUF584 (.1) AT2G34340 64 / 2e-13 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020043 [exp] 229 / 2e-77 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1) Lus10021536 [exp] 92 / 2e-23 AT4G21970 102 / 1e-27 Protein of unknown function, DUF584 (.1) Lus10040067 [exp] 92 / 6e-23 AT4G21970 98 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 81 / 4e-19 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 79 / 9e-19 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 72 / 5e-17 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 71 / 1e-15 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 70 / 7e-15 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 69 / 7e-15 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014000 [exp] 139 / 6e-42 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 138 / 1e-41 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 84 / 3e-20 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 81 / 2e-19 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 81 / 2e-19 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 82 / 3e-19 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 72 / 5e-16 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 70 / 3e-15 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 67 / 6e-14 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 56 / 2e-10 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10006781 pacid=23163561 polypeptide=Lus10006781 locus=Lus10006781.g ID=Lus10006781.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGTACAGCAGGAGCAGCAGAAGCATAACAAGCAGGAGGAGCATGAGGAACAATGGCGATTTTGAGGAATCGGAGATTTGGTCGGTGATGA AAGAAATGGAAGGCGGCGGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCGACTCCTAATCTGATCAGGAATCCTTCCCCTGCCACGTGGCGCGTTTC CAGCACCTCTCCCAGAGCCATCAACCCAACAAAAACAACAGCAACATCGGACGGTCAGAAGATGATAAGTAGTGTCGGGAGATCATCTGCTCCGATGAAC ATTCCTGATTGGTCAAAGATTTACGGGGTTGACTCGTCCGCTGCTGACAACAATGATGAAGTGGACGATGAAGATGATGAAGACGACGTCGTCCCGCCTC ATGAATGGCTAGCGAAGAGGCTTGCCAGGTCCCAGATTTCTTCCTTCTCTGTTTGCGAAGGGATTGGGAGGACTCTCAAGGGAAGAGATCTCAGTAAGGT CAGGAACGCCATCTTGACAAAAACTGGGTTCCTTGAGTGA
AA sequence Show only first row Show all	>Lus10006781 pacid=23163561 polypeptide=Lus10006781 locus=Lus10006781.g ID=Lus10006781.BGIv1.0 annot-version=v1.0 MADWYSRSSRSITSRRSMRNNGDFEESEIWSVMKEMEGGGSSSSSSSSSSSTPNLIRNPSPATWRVSSTSPRAINPTKTTATSDGQKMISSVGRSSAPMN IPDWSKIYGVDSSAADNNDEVDDEDDEDDVVPPHEWLAKRLARSQISSFSVCEGIGRTLKGRDLSKVRNAILTKTGFLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21970			Protein of unknown function, D...		Lus10006781 [exp]	0	1
AT5G48385			FRIGIDA-like protein (.1)		Lus10004131 [exp]	1.0	0.8729
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10025111 [exp]	9.5	0.7180
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	11.0	0.7806
					Lus10034993 [exp]	32.6	0.7563
AT3G03210			unknown protein		Lus10007384 [exp]	34.1	0.7691
AT4G18593			dual specificity protein phosp...		Lus10013913 [exp]	36.2	0.7002
					Lus10030724 [exp]	36.9	0.7471
AT5G27220			Frigida-like protein (.1)		Lus10027763 [exp]	40.5	0.6642
AT4G10810			unknown protein		Lus10022380 [exp]	41.1	0.6835
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10025059 [exp]	42.2	0.7148

Compare expression of checked genes

Lus10006781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.