Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 476 / 1e-167 Galactosyltransferase family protein (.1.2) AT2G32430 462 / 4e-162 Galactosyltransferase family protein (.1) AT1G11730 442 / 2e-154 Galactosyltransferase family protein (.1) AT4G26940 437 / 4e-152 Galactosyltransferase family protein (.1.2) AT1G32930 405 / 1e-139 Galactosyltransferase family protein (.1) AT1G77810 400 / 7e-138 Galactosyltransferase family protein (.1.2) AT1G22015 386 / 3e-132 DD46 Galactosyltransferase family protein (.1) AT1G33430 384 / 3e-131 Galactosyltransferase family protein (.1.2) AT5G53340 196 / 4e-59 Galactosyltransferase family protein (.1.2) AT4G32120 183 / 5e-54 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020042 [exp] 630 / 0 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10001148 [exp] 475 / 4e-167 AT1G05170 458 / 4e-161 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 466 / 2e-163 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 443 / 6e-154 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 432 / 7e-150 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 429 / 5e-149 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 427 / 6e-148 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 421 / 8e-146 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 412 / 3e-142 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004200 [exp] 506 / 1e-179 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 498 / 2e-176 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 473 / 4e-166 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 465 / 4e-163 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 415 / 1e-143 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 409 / 4e-141 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 403 / 5e-139 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 391 / 4e-134 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 390 / 4e-133 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 213 / 2e-65 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006782 pacid=23163556 polypeptide=Lus10006782 locus=Lus10006782.g ID=Lus10006782.BGIv1.0 annot-version=v1.0 ATGTTGGGTAAGAGTAGAGCAGGAGCTGCTGACTTTTCTGCAAAGAAACTGTTTTCCAGGAAATGGGCAATCTTTCTCTGCTTTGGCAGCTTCTTTGCGG GAACCCTCTTCACTAACAGGATGTGGGTTGTGCCTGAAGAAGCCAATTTAGGAGATGAGGGTTGTAATCAGAAGCTTGTAAGTGTCTATATTAGATTGTT TCATTTGGGCAAAAAAGTTCTGTTGCTTTGCAGAACTCTAGATAACAAAATCTCAGGTTTAGAGGCGAAATTAGCTGCTGCCAAGACGAAGCAGAAAGCT CTAGCTGATGGAACTCTTGAATCAGGAGATTCGAAGAGGAACTACTCCATGGTTATAGGGATAAATACATCTTTTAGCAGCCGGAAAAGAAGAGATTCCG TTCGTGCAACTTGGATGCCACAAGTTGCATCTCAAGTCTCAACAACTCGAGTTGTTGGGAGAGGGTTCAGATTGAATTTTATATTATTCATCAACACGCC TCTTCAAACGAAAGCTCTCAGAAGAGCTGACGTTTGCACAACTTCAGTAAGGGAGAAAAGGAAAAGGCTGGAGAAGGAGAAAGGGATCGTTATTCGTTTT GTTATAGGTCACAGTTCAACATCTGGTGGCATTCTTGACAAAGCCATTGATGCAGAAGATAAGATGCATGGAGATTTCTTGAGGCTGGACCACGTTGAGG GATACTTGGAATTATCTGCCAAGACCAAGACTTATTTTTCTACAGCTGTTGCTTTGTGGGATGCAGATTTCTATGTCAAAGTTGACGATGATGTTCATGT TAATATAGCAACACTTGGATCAATACTATCAGAACATGCTAAGAAGCCGAGGGTATATATTGGTTGCATGAAGTCTGGTCCTGTTCTTGCCAAAAAAGGA GTAAGATATCATGAACCTGAATACTGGAAATTTGGAGCGGTTGGGAAGAAGGATTTTCGCCATGCTACAGGACAACTTTATGCCATTTCTAAGGATGTGG CAACCTACATAGCCGTTAACCAACAATTGTTACACAAATTCGCAAACGAAGATGTTTCCATGGGGTCTTGGGTTCTTGGTCTTGAAGTGGAGCATGTGGA TGAAAGGAGACTCTGCTGTGGTACTCCACCAGATTGTGAGATGAGGGCTCGGCTTGGGACAACATGTGCAGTTTCATTTGACTGGAAGTGCAGCGGGATT TGCCAATCAGTTGAGAGGATGGCTGAAGTTCACAAGCGTTGTGGCGAAGACGAGAATGCCCTATGGAGTGCCACCACCCTCTGA
AA sequence Show only first row Show all	>Lus10006782 pacid=23163556 polypeptide=Lus10006782 locus=Lus10006782.g ID=Lus10006782.BGIv1.0 annot-version=v1.0 MLGKSRAGAADFSAKKLFSRKWAIFLCFGSFFAGTLFTNRMWVVPEEANLGDEGCNQKLVSVYIRLFHLGKKVLLLCRTLDNKISGLEAKLAAAKTKQKA LADGTLESGDSKRNYSMVIGINTSFSSRKRRDSVRATWMPQVASQVSTTRVVGRGFRLNFILFINTPLQTKALRRADVCTTSVREKRKRLEKEKGIVIRF VIGHSSTSGGILDKAIDAEDKMHGDFLRLDHVEGYLELSAKTKTYFSTAVALWDADFYVKVDDDVHVNIATLGSILSEHAKKPRVYIGCMKSGPVLAKKG VRYHEPEYWKFGAVGKKDFRHATGQLYAISKDVATYIAVNQQLLHKFANEDVSMGSWVLGLEVEHVDERRLCCGTPPDCEMRARLGTTCAVSFDWKCSGI CQSVERMAEVHKRCGEDENALWSATTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10006782 [exp]	0	1
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	1.4	0.6668
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10035705 [exp]	25.0	0.6352
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	30.5	0.5903
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	31.5	0.6306
AT3G09470			Major facilitator superfamily ...		Lus10023760 [exp]	31.6	0.5913
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	34.6	0.5714
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10032496 [exp]	47.6	0.5848
					Lus10039517 [exp]	57.8	0.6055
AT4G37030			unknown protein		Lus10001003 [exp]	58.7	0.5381
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	62.6	0.5654

Compare expression of checked genes

Lus10006782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.