Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 171 / 2e-53 RING/U-box superfamily protein (.1) AT1G49220 135 / 5e-39 RING/U-box superfamily protein (.1) AT1G49200 133 / 1e-38 RING/U-box superfamily protein (.1) AT3G18773 129 / 5e-37 RING/U-box superfamily protein (.1) AT1G49210 129 / 7e-37 RING/U-box superfamily protein (.1) AT5G05280 117 / 4e-33 RING/U-box superfamily protein (.1) AT3G10910 117 / 5e-33 RING/U-box superfamily protein (.1) AT1G20823 109 / 1e-29 RING/U-box superfamily protein (.1) AT1G76410 105 / 3e-28 ATL8 RING/U-box superfamily protein (.1) AT5G01880 99 / 3e-26 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005817 [exp] 238 / 3e-79 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10005814 [exp] 217 / 2e-71 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006788 [exp] 213 / 1e-69 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10033515 [exp] 179 / 6e-56 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10020859 [exp] 174 / 4e-54 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10005815 [exp] 165 / 4e-51 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10005816 [exp] 164 / 7e-51 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006787 [exp] 158 / 3e-48 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10006786 [exp] 156 / 9e-48 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 178 / 4e-56 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 176 / 4e-55 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 152 / 5e-46 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 133 / 5e-39 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 129 / 3e-37 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 123 / 6e-35 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 122 / 9e-35 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 108 / 2e-29 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 107 / 3e-29 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 107 / 5e-29 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006785 pacid=23150737 polypeptide=Lus10006785 locus=Lus10006785.g ID=Lus10006785.BGIv1.0 annot-version=v1.0 ATGGCTAGAAGGCTCCTGCTCAACACCCCACCTCCTCCGGCGCCGGCGACACCTACTCCTCCGGCAGCCACCGATAGCACTTTCGATGCCAACGTGGTGA TGGTCCTCTCCGTCCTCCTCTGCGCCCTGATATGCTCTCTCGGTCTCAACTCAATAATTCGGTGCGCTCTACGATGCTCCCACTTGGTACCCGCCGGCGG CCAACTTTCCACCGCCTCCGGCACCACCCCACCGCCAAGCCTTGCCAAAACGGGGCCAAAGAAAAAGACCACCAGATATCTCAAGAAAAAGGCCCTCAAG ACCTTCCCTGTCGTCTCTTTCTCCTACGAGGGGTTGAACTTGGACGCCGAGTGCGTCATATGCCTGTCGGAGTTCGCCGCCGGCGACCGGGTCAAGATTC TGCCCAAGTGTAACCACGGCTTCCACGTCAAGTGTATCGACAGGTGGCTTGGGTCCCACTCATCCTGCCCCACTTGCCGCCACTGCCTCATCGACACCTG CCGGAAAATTGTCGGAGCCTCAACGGCCGCCACACCAACTCTGCCGCCGGCGCAAGTGGCCGGGGGTGTTCCGGGGGGTGTGGTTGTTTGTTACGCGGCT GTTGTTGCAAGAGGGGTTTGCCGCCGTTGGAACAAGAGGATTTGGTACGGATCTATAGGGGAGCTAGCTAGCTAG
AA sequence Show only first row Show all	>Lus10006785 pacid=23150737 polypeptide=Lus10006785 locus=Lus10006785.g ID=Lus10006785.BGIv1.0 annot-version=v1.0 MARRLLLNTPPPPAPATPTPPAATDSTFDANVVMVLSVLLCALICSLGLNSIIRCALRCSHLVPAGGQLSTASGTTPPPSLAKTGPKKKTTRYLKKKALK TFPVVSFSYEGLNLDAECVICLSEFAAGDRVKILPKCNHGFHVKCIDRWLGSHSSCPTCRHCLIDTCRKIVGASTAATPTLPPAQVAGGVPGGVVVCYAA VVARGVCRRWNKRIWYGSIGELAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	0	1
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	2.4	0.8972
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	3.2	0.9137
AT3G43660			Vacuolar iron transporter (VIT...		Lus10018150 [exp]	4.0	0.8940
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	4.0	0.9030
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	5.5	0.8831
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	5.7	0.8666
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10029464 [exp]	7.6	0.8248
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	9.2	0.8762
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	9.5	0.8376
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	12.7	0.8636

Compare expression of checked genes

Lus10006785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.