Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 157 / 3e-48 RING/U-box superfamily protein (.1) AT3G18773 127 / 8e-37 RING/U-box superfamily protein (.1) AT1G49210 126 / 3e-36 RING/U-box superfamily protein (.1) AT1G49220 123 / 9e-35 RING/U-box superfamily protein (.1) AT1G49200 122 / 1e-34 RING/U-box superfamily protein (.1) AT5G05280 118 / 1e-33 RING/U-box superfamily protein (.1) AT3G10910 113 / 1e-31 RING/U-box superfamily protein (.1) AT5G01880 102 / 1e-27 RING/U-box superfamily protein (.1) AT1G76410 102 / 2e-27 ATL8 RING/U-box superfamily protein (.1) AT1G20823 99 / 8e-26 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005816 [exp] 293 / 4e-102 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10005815 [exp] 228 / 2e-76 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10005814 [exp] 212 / 7e-70 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006788 [exp] 209 / 9e-69 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10006787 [exp] 182 / 2e-58 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10033515 [exp] 175 / 4e-55 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10005817 [exp] 174 / 7e-55 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10020859 [exp] 170 / 6e-53 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10006785 [exp] 169 / 8e-53 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010500 [exp] 168 / 1e-52 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 165 / 2e-51 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 143 / 6e-43 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 128 / 3e-37 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 128 / 4e-37 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 127 / 5e-37 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 125 / 2e-36 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 108 / 5e-30 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 106 / 6e-29 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 103 / 1e-27 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006786 pacid=23150754 polypeptide=Lus10006786 locus=Lus10006786.g ID=Lus10006786.BGIv1.0 annot-version=v1.0 ATGGATTATTCAACCCCCGCCGCCAGAAAACTCCTCCTCCTCCACAACTCCCCGCCTCCGGCCACCGCCCCGGCCACGGTCACCAGCGAGTTCGACGCCA AGGTAGTGATGATCATCTCCATCGTCCTCTGCGCGTTGATTGTCTCTCTAATTCTCAACTCAATCATCCGCTGCGGACTGAGATGCTCCCTGTCAGTACC CTCCACCGGCGACGACCAATTTTCCGGCGACGGAGGAGGTGGAAAGTTGGCCACTAACGGGATTAAAAAGAATGCCCTCAAGACTTTCCCCGTCGTCACC TTCTCTGCAGGGTTGGATTTGGATGTTGAGTGTGTCATCTGCTTATCGGAGTTTGTCGCCGGCGACTTGGTTAAGGTCCTGCCGACGTGTAACCATGGGT TCCACGTCAAGTGTATTGATCAGTGGCTTGGGGATCATTCTTCCTGCCCCACTTGCCGTCACTGCCTTACCGGTGGTGAAGCTGTCACGCCGGTGGCGGT GATTCCGGCGGAAGGTGTTGTTGTTAGTATGTCGCCGATGGAAGGGGAAGGTCCCATCCGAGAACGAAGAATGATCAATTGGGTCTTCTACTAG
AA sequence Show only first row Show all	>Lus10006786 pacid=23150754 polypeptide=Lus10006786 locus=Lus10006786.g ID=Lus10006786.BGIv1.0 annot-version=v1.0 MDYSTPAARKLLLLHNSPPPATAPATVTSEFDAKVVMIISIVLCALIVSLILNSIIRCGLRCSLSVPSTGDDQFSGDGGGGKLATNGIKKNALKTFPVVT FSAGLDLDVECVICLSEFVAGDLVKVLPTCNHGFHVKCIDQWLGDHSSCPTCRHCLTGGEAVTPVAVIPAEGVVVSMSPMEGEGPIRERRMINWVFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10006786 [exp]	0	1
AT3G23880			F-box and associated interacti...		Lus10023239 [exp]	8.6	0.7594
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10025744 [exp]	10.3	0.7788
AT3G62550			Adenine nucleotide alpha hydro...		Lus10010013 [exp]	10.6	0.7140
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10036422 [exp]	19.1	0.7093
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	22.5	0.7381
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10036421 [exp]	22.7	0.7479
AT1G60970			SNARE-like superfamily protein...		Lus10025383 [exp]	25.2	0.7354
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	27.1	0.7247
AT3G43660			Vacuolar iron transporter (VIT...		Lus10018150 [exp]	27.8	0.7574
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029771 [exp]	31.0	0.7306

Compare expression of checked genes

Lus10006786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.