Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 143 / 8e-43 RING/U-box superfamily protein (.1) AT5G05280 114 / 8e-32 RING/U-box superfamily protein (.1) AT1G49220 115 / 2e-31 RING/U-box superfamily protein (.1) AT3G18773 113 / 5e-31 RING/U-box superfamily protein (.1) AT1G76410 111 / 1e-30 ATL8 RING/U-box superfamily protein (.1) AT1G49210 112 / 2e-30 RING/U-box superfamily protein (.1) AT1G20823 109 / 9e-30 RING/U-box superfamily protein (.1) AT1G49200 110 / 1e-29 RING/U-box superfamily protein (.1) AT3G10910 105 / 3e-28 RING/U-box superfamily protein (.1) AT2G17450 100 / 1e-26 RHA3A RING-H2 finger A3A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005815 [exp] 219 / 2e-72 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10005816 [exp] 179 / 7e-57 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006788 [exp] 177 / 7e-56 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 176 / 1e-55 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10006786 [exp] 173 / 1e-54 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10005817 [exp] 172 / 6e-54 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006785 [exp] 164 / 1e-50 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10033515 [exp] 162 / 1e-49 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10020859 [exp] 162 / 2e-49 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 153 / 2e-46 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 149 / 4e-45 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 140 / 2e-41 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 130 / 1e-37 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 125 / 4e-36 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 125 / 1e-35 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 123 / 3e-35 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 115 / 4e-32 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 112 / 5e-31 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 108 / 1e-29 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006787 pacid=23150756 polypeptide=Lus10006787 locus=Lus10006787.g ID=Lus10006787.BGIv1.0 annot-version=v1.0 ATGGATTCAGCCACTAATCACATGATCTTACTCCAAACCCCCACCATCGCCGGCAGAAGACTCCTCCTCAACTCCTCCCCTCCTCCCCTCGCCGAGCCAG AAAGCAAATCCGATGCCAAGGTGGTGATGGTGGTCTCCGTCCTCCTCTGTGCCTTGATCGTGTCTCTAATCCTCAACTCGATAGTCCGCTGCGCATTGAG ATGCTTCTACTCCGAACCCACATCCGCCGGCGCCGGAGCTCCGGCGACGGCGAAGTTAGCAAATACCGGAATTAAAAAGAAGGCCCTCAAGACTTTCCCC GTCGTCACCTTCTCCGAGTCTGATGAGGGGTTGAATTTGGATGCTGAGTGTGTCATCTGCTTGTTGGAGTTTGCCGCCGGCGACTTGATCAAGGTCCTGC CGACGTGTAACCACGGATTCCACGTCAAGTGTATTGATCAGTGGCTTGGGTCCCACTCTTCCTGCCCTACTTGCCGCCACCCCTACCTCCCCCCCACTGC CTCATCGAGCCCCGCCGGAAGGTTTCTGCCGTCGGTGAAGTTGTTACTCCGGCCGTTGTGGCTTCGGTGGAAGATGTCGTTGTTGTTAGTATGCCACCGT TGGAAGCGGAAGGTCCGGTGCGGGAACACCGAATGA
AA sequence Show only first row Show all	>Lus10006787 pacid=23150756 polypeptide=Lus10006787 locus=Lus10006787.g ID=Lus10006787.BGIv1.0 annot-version=v1.0 MDSATNHMILLQTPTIAGRRLLLNSSPPPLAEPESKSDAKVVMVVSVLLCALIVSLILNSIVRCALRCFYSEPTSAGAGAPATAKLANTGIKKKALKTFP VVTFSESDEGLNLDAECVICLLEFAAGDLIKVLPTCNHGFHVKCIDQWLGSHSSCPTCRHPYLPPTASSSPAGRFLPSVKLLLRPLWLRWKMSLLLVCHR WKRKVRCGNTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	0	1
AT5G44005			unknown protein		Lus10003608 [exp]	2.0	0.8925
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	2.4	0.8573
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	2.8	0.8724
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	5.3	0.8262
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	5.5	0.8409
AT3G01960			unknown protein		Lus10012546 [exp]	5.7	0.8124
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	7.4	0.8113
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	9.6	0.8469
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	10.4	0.8116
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	11.5	0.7831

Compare expression of checked genes

Lus10006787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.