Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49230 205 / 6e-67 RING/U-box superfamily protein (.1) AT1G49220 170 / 1e-52 RING/U-box superfamily protein (.1) AT1G49210 160 / 5e-49 RING/U-box superfamily protein (.1) AT1G49200 158 / 3e-48 RING/U-box superfamily protein (.1) AT3G18773 151 / 1e-45 RING/U-box superfamily protein (.1) AT3G10910 137 / 1e-40 RING/U-box superfamily protein (.1) AT5G05280 132 / 9e-39 RING/U-box superfamily protein (.1) AT1G76410 123 / 4e-35 ATL8 RING/U-box superfamily protein (.1) AT1G20823 119 / 1e-33 RING/U-box superfamily protein (.1) AT5G01880 113 / 1e-31 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005814 [exp] 353 / 3e-125 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005817 [exp] 261 / 3e-88 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10005815 [exp] 248 / 2e-83 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10020859 [exp] 233 / 4e-77 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10033515 [exp] 231 / 1e-76 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10006785 [exp] 231 / 1e-76 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10005816 [exp] 213 / 7e-70 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006786 [exp] 210 / 5e-69 AT1G49230 176 / 9e-56 RING/U-box superfamily protein (.1) Lus10006787 [exp] 197 / 6e-64 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G309600 [exp] 212 / 2e-69 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 207 / 1e-67 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 177 / 6e-56 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 157 / 4e-48 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 157 / 5e-48 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 148 / 1e-44 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 145 / 2e-43 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 131 / 4e-38 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 128 / 2e-37 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 125 / 4e-36 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006788 pacid=23150761 polypeptide=Lus10006788 locus=Lus10006788.g ID=Lus10006788.BGIv1.0 annot-version=v1.0 ATGCCTAGAAGACTCCTCCTCCTCAACTCCTCCCCTTCTCCGGCCGCCGCCACCTCACCAGACAGCAAATTCGACGCCAACGTGGTGATGGTCCTCTCCG TCCTTCTTTGCGCCCTGATATGCTCTTTGGGTCTAAACTCGATAATTCGGTGCGCTCTACGGTGCTCCCACTTGGTACCCTCCGGTGTTGCCGCGGACCA ACTTTCCGCCGTCTCCGGCGCTGCCGCCACGGCCAGGTTAGCCAACACCGGGATCAAGAAGAAGGCTCTCAAGACCTTCCCCGTCGTCACCTTCTCCGAT GTCAAGGGATTGAACTTGGATGCCGAGTGCGTGATCTGCCTGTTGGAGTTCACCGCCGGCGACCGTGTCAAGATCCTTCCCAAGTGTAACCACGGCTTCC ACGTGAGATGTATCGACAAGTGGCTTGGGTCCCACTCTTCTTGCCCCACTTGCCGCCACTGCCTCATCGAGACTTGCCGGAAAATTGTCGACGGGGATGT CACTCCGGCTCCTGTGACGGCAGTTTCCGGCGACAATATTCCTTCTTCTTCTAATGCTGCTCAGTTGACGTCAGCTTTGGCACCGGCAGAAGATGTTGTT ATTACTATGCCGCCGATGGAAGCTGAAGGCCCGGTGAGGGAACACAGAATCGTCAAGAGTGTGTTCTTTTGGAGGAAAACTTGA
AA sequence Show only first row Show all	>Lus10006788 pacid=23150761 polypeptide=Lus10006788 locus=Lus10006788.g ID=Lus10006788.BGIv1.0 annot-version=v1.0 MPRRLLLLNSSPSPAAATSPDSKFDANVVMVLSVLLCALICSLGLNSIIRCALRCSHLVPSGVAADQLSAVSGAAATARLANTGIKKKALKTFPVVTFSD VKGLNLDAECVICLLEFTAGDRVKILPKCNHGFHVRCIDKWLGSHSSCPTCRHCLIETCRKIVDGDVTPAPVTAVSGDNIPSSSNAAQLTSALAPAEDVV ITMPPMEAEGPVREHRIVKSVFFWRKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49230			RING/U-box superfamily protein...		Lus10006788 [exp]	0	1
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	2.8	0.8852
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	2.8	0.8724
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	4.2	0.8786
AT1G49230			RING/U-box superfamily protein...		Lus10005814 [exp]	6.2	0.8028
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	6.7	0.8744
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	8.4	0.8502
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	8.5	0.8520
AT5G14490	NAC	ANAC085	NAC domain containing protein ...		Lus10003668 [exp]	9.9	0.8508
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10008010 [exp]	10.7	0.8664
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	13.7	0.8517

Compare expression of checked genes

Lus10006788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.