Plant FIBer expression Database

Lus10006790 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18770 248 / 1e-74 Autophagy-related protein 13 (.1)
AT3G49590 158 / 1e-41 ATG13 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005812
[exp]
764 / 0 AT3G18770 385 / 2e-127 Autophagy-related protein 13 (.1)
Lus10019097
[exp]
192 / 6e-54 AT3G49590 466 / 4e-158 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Lus10034457
[exp]
176 / 4e-48 AT3G49590 460 / 1e-155 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G309800
[exp]
388 / 9e-128 AT3G18770 434 / 2e-144 Autophagy-related protein 13 (.1)
Potri.019G010700
[exp]
383 / 2e-126 AT3G18770 380 / 3e-124 Autophagy-related protein 13 (.1)
Potri.012G004400
[exp]
197 / 1e-55 AT3G49590 402 / 9e-133 autophagy-related 13, Autophagy-related protein 13 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF10033 ATG13 Autophagy-related protein 13
Representative CDS sequence
>Lus10006790 pacid=23150769 polypeptide=Lus10006790 locus=Lus10006790.g ID=Lus10006790.BGIv1.0 annot-version=v1.0
ATGGCAACATCTCATGGAAATACCACGCATTCAGAATCAGCCAAAATGGAGCAGGTCATCACCGAGTTTTTTGCCAAGAGCCTCCACATCATACTCGAGT
CGAGGTCTCCTTTCATGTCATCTCGCAACTTCAGCGGAGATCAGACTGTGGCATCGTCTCCATGTTCATCCTCATCCTCCTCCTCGAGCGTGAGGCCAAG
GGACAAATGGTTCAACTTAGCTCTGGGAGAGTGCCCCGCTGCACTGGAGAATCTCGACCTTTGGAGGCAGAGCAATCTCGATCCCCTAGTGGTCGATGTG
ATATTGGCGAAAAAGGACAATGCTTTCAGTTCTGATCAGGAAGAGCTCTTGTCTGGAGGTATAAGTGAGAAGGTTATAGAGAGGTGGGTGGTACAGTACG
ACACTAGGAAGCCGAGGGAATCTAATTCGAGCAGGAGATCAGGCAGCAACGTACTGCATTCGCTGTACAAGAAGTCGATAATGCTCCTGAGGTCTTTGTA
TGTTACTGCTAGGCTTTTACCTGCATACAAGATCTTCCGCGACCTGAATTCCTCTGGACTGCTACGACCGTTTACTCTTACTCATAGGGTATCCTCTTTC
GTCACTCGTAGAGAAGAAGAGGTTGATATGCAGCGGTTTAGCTTCACCCCTGTTGAGACTTCCTCTGGAAGGCTTTGCCTTTCGGTGGTGTATCATTCTT
CAGTATCGGATGCAAGCTCCGAATCTTCCACACCAATGTCTCCTCAGTTCATTCCGGATTATGTCGGAAGTCCATTGGCTGATCCACTTAAAAGGTTCAC
TTCCCTTCCGGTATCTCACGGTTCCCCATCGTCTTCACCCTTTTCCAGAAGGCATAGCTGGAGTTACGACCGGAACCGGTCTTCTGTTTACAAAACCGGT
TCCGGTTATGATGAATATTATCCTTCTCCAAACTTTACTCCATCACCATCACCATCACCACCAATCCACATGCCTGGAAATGAAAACCGTTGGCGAACCG
AAAGTGCACCTGTTAGTATACCTAGGCCGTCAAACAAGTGCCCTCTACTGCCATCAACTAACCCTAAACCAGATGCAAGTTCAGGTTTGCTTCACACTGG
TGTGTCAGTTGAAAAGGTTATACATAAAGATGACAACTTTAAAACGAAGCTTCTGGGGACGAATTCGTTCTCTAGAAGCTCCAGCAAGTCTTTCCATGAT
GACTTTGATGAGCTTGATTTTCCTTGCCATTTCGATGTCGAGAACGATGATGCAACCGATCATGGTAGCAGGCCTGAATCTTACGATCAGAAAGATAATC
TCTTGAACCAACTCGAACCGGGTGGAGGAACTGCCTTCCCGATCAGGAAATCCCAGGACGCTGTGGTGGGTGCCCTAGTCCGTATGCTGAAGAAAGCTCC
GCCTCTTCGCCAGGAACTCTCCTCTAACATGGCCGATTCGAGTCAAGACTCCACCAAGTCCAAGCTGTGGGCCAGCACCGCTCTATCAGAACAGCAGACT
GATGATACATCTTCGTCAAGTTTCGCATCGTCTGGCCTCACTGCATCGAAGACAACAGCCGATGCGTTGGAAGAGCTGCGCGGGTACAAACGAATGAAGG
ACTTCTTGCTGAGCCAAGGCGCTTGA
AA sequence
>Lus10006790 pacid=23150769 polypeptide=Lus10006790 locus=Lus10006790.g ID=Lus10006790.BGIv1.0 annot-version=v1.0
MATSHGNTTHSESAKMEQVITEFFAKSLHIILESRSPFMSSRNFSGDQTVASSPCSSSSSSSSVRPRDKWFNLALGECPAALENLDLWRQSNLDPLVVDV
ILAKKDNAFSSDQEELLSGGISEKVIERWVVQYDTRKPRESNSSRRSGSNVLHSLYKKSIMLLRSLYVTARLLPAYKIFRDLNSSGLLRPFTLTHRVSSF
VTRREEEVDMQRFSFTPVETSSGRLCLSVVYHSSVSDASSESSTPMSPQFIPDYVGSPLADPLKRFTSLPVSHGSPSSSPFSRRHSWSYDRNRSSVYKTG
SGYDEYYPSPNFTPSPSPSPPIHMPGNENRWRTESAPVSIPRPSNKCPLLPSTNPKPDASSGLLHTGVSVEKVIHKDDNFKTKLLGTNSFSRSSSKSFHD
DFDELDFPCHFDVENDDATDHGSRPESYDQKDNLLNQLEPGGGTAFPIRKSQDAVVGALVRMLKKAPPLRQELSSNMADSSQDSTKSKLWASTALSEQQT
DDTSSSSFASSGLTASKTTADALEELRGYKRMKDFLLSQGA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18770 Autophagy-related protein 13 (... Lus10006790
[exp]
0 1
AT3G11280 MYB Duplicated homeodomain-like su... Lus10014837
[exp]
3.2 0.8173
AT3G18770 Autophagy-related protein 13 (... Lus10005812
[exp]
3.5 0.8162
AT1G20823 RING/U-box superfamily protein... Lus10030728
[exp]
12.2 0.8058
AT1G71140 MATE efflux family protein (.1... Lus10041053
[exp]
15.0 0.7871
AT2G47390 Prolyl oligopeptidase family p... Lus10010007
[exp]
15.5 0.7474
AT2G45910 U-box domain-containing protei... Lus10040825
[exp]
17.9 0.7776
AT2G20310 RIN13 RPM1 interacting protein 13 (.... Lus10025944
[exp]
19.4 0.7350
AT5G44070 ATPCS1, ARA8, C... CADMIUM SENSITIVE 1, ARABIDOPS... Lus10003623
[exp]
20.1 0.7701
AT5G62000 ARF ORE14, HSS, ARF... ORESARA 14, HLS1 SUPPRESSOR, A... Lus10032541
[exp]
20.7 0.6632
AT1G49230 RING/U-box superfamily protein... Lus10006785
[exp]
21.7 0.7906

Lus10006790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.