Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09800 270 / 9e-89 ARM repeat superfamily protein (.1) AT5G64660 254 / 3e-82 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G18710 251 / 2e-81 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G65920 74 / 1e-14 ARM repeat superfamily protein (.1) AT3G49810 66 / 7e-12 ARM repeat superfamily protein (.1) AT3G11840 46 / 2e-05 PUB24 plant U-box 24 (.1) AT1G66160 44 / 9e-05 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT5G37490 44 / 0.0001 ARM repeat superfamily protein (.1) AT2G35930 42 / 0.0003 PUB23 plant U-box 23 (.1) AT5G67340 42 / 0.0004 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005810 [exp] 540 / 0 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10042798 [exp] 184 / 2e-55 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10029771 [exp] 182 / 2e-54 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10010598 [exp] 65 / 1e-11 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10040125 [exp] 59 / 5e-10 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1) Lus10029395 [exp] 59 / 1e-09 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10001079 [exp] 55 / 4e-08 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10004191 [exp] 54 / 1e-07 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10021267 [exp] 50 / 7e-07 AT2G35930 474 / 5e-167 plant U-box 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110600 [exp] 327 / 5e-111 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.005G057500 [exp] 326 / 2e-110 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.005G189800 [exp] 206 / 7e-64 AT3G18710 260 / 4e-83 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.002G070500 [exp] 199 / 4e-61 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.014G014300 [exp] 75 / 6e-15 AT3G49810 553 / 0.0 ARM repeat superfamily protein (.1) Potri.006G202600 [exp] 68 / 1e-12 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.002G116500 [exp] 68 / 1e-12 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 67 / 2e-12 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G277700 [exp] 66 / 5e-12 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 65 / 1e-11 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05536 [flax] [poplar] Neurochondrin Neurochondrin
Representative CDS sequence Show only first row Show all	>Lus10006791 pacid=23150767 polypeptide=Lus10006791 locus=Lus10006791.g ID=Lus10006791.BGIv1.0 annot-version=v1.0 ATGTCGAAGATCGCTTCTTTTGCGGAGGGATCGGAGGAGAATAGGGTCTTTCTGGCTAAGGCGGATGGGTTTTTGGAGAGGATTGTGGATCTGGTGGTGT GTACGGACGGCGGCGATTTGGATTCGTCAGAGATGGCGGTTAGAGTGTTGGATTTGGTGAAGGATGGATATGGGGATTTTGAGAAATTGAAAGGATTGTT GATTAATTCGAATTGTTTGCCGTCGATGGTTTTGGTTCTGAAACAGGGGAGCCGGTTGGATTCACGAATCGGATCGGTACGGATCCTCCAATCAATCGCG GTCGACGCCGAGTCGAAGTTGTTGATAGCGGAAAGCGAAGGATTACTATCCCAATTGGTGAATTCGATCAGATTGGAGAACGATTCAGCGTTAATGGAAG CTACCCTTTCGTGTTTAATATCAATCTCAAGTCCGAAGCGGGTGAAATCGAAGCTTGTCGATCTGAAAACAATAGAGAAGCTCCGCGACATTCTCCGGCA GCAAGAGGCCGCCGTCTCGACGACGGAGAAGGCACTGAAGCTCTTGGAATCGGTGTCGTCGTGCCGGGAGGGGAGGGCAGAGCTATGCGGCGACACGGCG TGCGTGGAGGCGGTGGTGAGGAAGGCGATGAAGGTGTCGGAGGCGGCGACGGAGGTCGCCGTGACGATACTATGGAGTCTGTGTTACCTGTTCAGGGACC AGCGCGCGGCGGAGGCGGTGGTGAGGAGTAATGGGCTGACGAGGATCCTGCTTTTGATGCAGAGTAACTGCTCGCCGGCGGTGAGGCAGATGTCGACGGA TATGCTGAGGATTTTCCGGGTGAATTCCAAGTCGTGTCTTTCGAGTTACGACACCAAAACGACCCACATTATGCCGTTTTGA
AA sequence Show only first row Show all	>Lus10006791 pacid=23150767 polypeptide=Lus10006791 locus=Lus10006791.g ID=Lus10006791.BGIv1.0 annot-version=v1.0 MSKIASFAEGSEENRVFLAKADGFLERIVDLVVCTDGGDLDSSEMAVRVLDLVKDGYGDFEKLKGLLINSNCLPSMVLVLKQGSRLDSRIGSVRILQSIA VDAESKLLIAESEGLLSQLVNSIRLENDSALMEATLSCLISISSPKRVKSKLVDLKTIEKLRDILRQQEAAVSTTEKALKLLESVSSCREGRAELCGDTA CVEAVVRKAMKVSEAATEVAVTILWSLCYLFRDQRAAEAVVRSNGLTRILLLMQSNCSPAVRQMSTDMLRIFRVNSKSCLSSYDTKTTHIMPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	0	1
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10036181 [exp]	1.0	0.9128
AT5G64660		ATCMPG2	"CYS, MET, PRO, and GLY protei...		Lus10005810 [exp]	3.0	0.8968
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	4.5	0.9050
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	4.7	0.9124
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	5.5	0.8964
AT1G65720			unknown protein		Lus10031363 [exp]	6.5	0.9077
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	9.5	0.8710
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	10.9	0.8846
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	11.5	0.9037
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	11.7	0.8736

Compare expression of checked genes

Lus10006791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.