Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 97 / 2e-20 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 96 / 3e-20 NB-ARC domain-containing disease resistance protein (.1) AT1G69550 54 / 5e-07 disease resistance protein (TIR-NBS-LRR class) (.1) AT3G44670 53 / 8e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G44510 52 / 2e-06 TAO1 target of AVRB operation1 (.1) AT3G44480 51 / 2e-06 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G07040 49 / 8e-06 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 49 / 1e-05 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G44630 49 / 2e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G51630 47 / 5e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005807 [exp] 423 / 3e-144 AT1G69550 61 / 5e-10 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10011278 [exp] 177 / 4e-46 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10008584 [exp] 144 / 7e-36 AT3G14470 186 / 2e-49 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 145 / 9e-36 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 130 / 9e-31 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 129 / 2e-30 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 117 / 6e-27 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028279 [exp] 113 / 2e-25 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 107 / 1e-23 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G121700 [exp] 187 / 2e-49 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 181 / 2e-47 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 177 / 3e-46 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 170 / 6e-44 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 170 / 1e-43 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 166 / 1e-42 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 164 / 5e-42 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 162 / 3e-41 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 162 / 3e-41 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135800 [exp] 160 / 2e-40 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006793 pacid=23150755 polypeptide=Lus10006793 locus=Lus10006793.g ID=Lus10006793.BGIv1.0 annot-version=v1.0 ATGGATGAGTTCGGGGGTATCTCGACTTGCAAAATGCACGATATGATGCATGATTTAGTCGAATCTATAACAAGAGAGAAGATCCTAAGAATCTGTAGCT CATCTGATGTGAAGAACATTACTTCCAGGACACGTCATCTAACTCTGCTAAACGAAGGGAATCGAGAACCGGACATTAATCACGAGATAGGAAATGTGAG CAAGGTCCGGACTCTTATATGCGTGAAGTTCTTTTCGAGAGAAGAATTCGCAAGAGTAATCCACAACTTCAAACGCTTGCGAGTGTTGGTAATATTGTTC GCAGACAATTCAGACGACTCTTCAACACAAGAGCTGCATTCAGTGAGTAAGCTGAAACATTTAAGATTCCTCTATTTCGGTTGTGAAGGAATGGAGAGGC TTCCAGATTCCGTAACGAACCTGCTTAATCTGCAAGTGATGGGCGTGGCTTCTAACAGATTCAAGGAACTTCCAAAGCAGATTATGAAGTTGGTTAATTT GAAGCATCTTTACATCCGCCATAATATCAGTATGGCATATGTGGAACATTTTGCTAGTATGCCAAAGGGGATCGGGGAGTTGAAATCGCTTCAAACCTTA CCGGTTTTCAATATCGAGACGGCTTCTTCTTCTTGGACAGAGTTGCAAGGGTTGAATGCCTTGCGTGGAGAACTAATCATTAGAAACTTGGCGAATGTCG AGTTTCTAAGAGGCGGTACTGTATGCTTATTAAACGGGAAGCCGCTTCTACAATCATTGACTTTGGATTGGGGCCGTACGAATGATGAAAACGACAAGGA AGAAGAAGAAGATGATGATGATGAGGATATATTGGAAATGCTTTGTCCCCACCCTAACCTTAAGAAGCTTGAGATACACGATGGTTATTCAGGTTCGAAG CTCCCTGATTGGTTGTCTAGCATCACGAATTTGGTGGAGATCTCATTGGAAGATTGTAGGAAATGCGAGTACCTTCCTCCATTACACCATCTCCCATGTT TGAAGAAGCTTAAATTCAGTGATTGTCCACGATTGAAGAGCGTCCGATATAACGAAGAAGATGTCCCCAGTTTTCGTTGTCTTGCGCATTTGTACATCAC GGATTGTTTGAAGCTGACACGGATGCCCACGTTCCCGATCGTCCAAGACGACTTGGAGTTAATCAGAGCCAGCTTGAAACCGTTATCAAGGACGATGAAG ATGACGACAAAGATGATGACAATAGGACCACTCTCCAAGGTGACCAAGTTGACATTACAGGAAACTGACGACGACCTCGAGCTTTTACCCGATCATGATG GTAATTTCAGTGGTTTCATCTCTCTTCAAGAGCTGTTCCTCAAGGATTGTTGCAGAGGTGTGAAAGTACCTAGCTCATTGTGTTGCAGCAAGACCCTAAC GGCAATCCATGTATACAGATGCGAGATGGTAATGTACCTGCCTCCATTACATACACTCCCATCTTTAACACAGCTTAAACTCGAGGATTGCCCAAAGCTG AAAGGATGTTTGCATGAAAAGGAAGATCAGGCAGAGGAGCACTGGTCGCATTTCTCTCGTCTATTGAGTTTGAAACTATCAGCTTGCCCAAACCTCACGC AGTTGCCTCGTTTTCCAACAGTCGAAGGCGATTTGCAGTTGTGGCGTGTGAGTGCGCAAGTACTATGCCCGACGATGAAGATGAAGAAAGCAGCTATGAT CACTCCTCTATCCAGGTTGACACACCTGACTATCTGGGATATTATCGACCTGGAATCTCTACCCGCACAAGGTCTTTGCAATCTAACTTCGCTTACAGAG TTGGTTATTGTGAGCTGTCCGAAATTGGAGTCTCTGCCTCCAGCAATGCGGCGCCTTACTTCGTTACGGACCCTGGTGATTCTATCGTGTCCGCATTTGA CAGAACGGTGTAGAATGGAAGAAGGTGAAGATTGGCCGAACATTTCTCACATTCCGAAGATTGTACTCGACCGGGAAATACTCCAGGATTCAGGTAGCGG GTCGGAGGCAAGCGTCTTGGATGATCCGCTGCTGATTTATAAAGATTCGGAAACGATGAACAACACTTGGAAAAGATCCACATCGCTCAACTTCTGTTAA
AA sequence Show only first row Show all	>Lus10006793 pacid=23150755 polypeptide=Lus10006793 locus=Lus10006793.g ID=Lus10006793.BGIv1.0 annot-version=v1.0 MDEFGGISTCKMHDMMHDLVESITREKILRICSSSDVKNITSRTRHLTLLNEGNREPDINHEIGNVSKVRTLICVKFFSREEFARVIHNFKRLRVLVILF ADNSDDSSTQELHSVSKLKHLRFLYFGCEGMERLPDSVTNLLNLQVMGVASNRFKELPKQIMKLVNLKHLYIRHNISMAYVEHFASMPKGIGELKSLQTL PVFNIETASSSWTELQGLNALRGELIIRNLANVEFLRGGTVCLLNGKPLLQSLTLDWGRTNDENDKEEEEDDDDEDILEMLCPHPNLKKLEIHDGYSGSK LPDWLSSITNLVEISLEDCRKCEYLPPLHHLPCLKKLKFSDCPRLKSVRYNEEDVPSFRCLAHLYITDCLKLTRMPTFPIVQDDLELIRASLKPLSRTMK MTTKMMTIGPLSKVTKLTLQETDDDLELLPDHDGNFSGFISLQELFLKDCCRGVKVPSSLCCSKTLTAIHVYRCEMVMYLPPLHTLPSLTQLKLEDCPKL KGCLHEKEDQAEEHWSHFSRLLSLKLSACPNLTQLPRFPTVEGDLQLWRVSAQVLCPTMKMKKAAMITPLSRLTHLTIWDIIDLESLPAQGLCNLTSLTE LVIVSCPKLESLPPAMRRLTSLRTLVILSCPHLTERCRMEEGEDWPNISHIPKIVLDREILQDSGSGSEASVLDDPLLIYKDSETMNNTWKRSTSLNFC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10006794 [exp]	1.0	0.8781
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10012323 [exp]	2.0	0.8318
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	2.4	0.8381
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	3.5	0.8387
AT3G11690			unknown protein		Lus10013608 [exp]	5.3	0.8209
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10010569 [exp]	6.5	0.7833
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	6.7	0.8273
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	8.4	0.8119
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	9.4	0.8198
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	9.9	0.7995

Compare expression of checked genes

Lus10006793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.