Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27990 101 / 5e-27 Pre-rRNA-processing protein TSR2, conserved region (.1) AT3G22510 76 / 1e-17 Pre-rRNA-processing protein TSR2, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005806 [exp] 315 / 1e-110 AT5G27990 107 / 4e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10027901 [exp] 118 / 3e-33 AT5G27990 79 / 3e-18 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10002404 [exp] 117 / 5e-33 AT5G27990 77 / 1e-17 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006124 [exp] 85 / 6e-19 AT3G22520 340 / 4e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035000 [exp] 200 / 4e-65 AT5G27990 126 / 1e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.005G047901 [exp] 189 / 7e-61 AT5G27990 124 / 7e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.010G086800 [exp] 105 / 3e-29 AT3G22510 98 / 2e-27 Pre-rRNA-processing protein TSR2, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10273 [flax] [poplar] WGG Pre-rRNA-processing protein TSR2
Representative CDS sequence Show only first row Show all	>Lus10006795 pacid=23150775 polypeptide=Lus10006795 locus=Lus10006795.g ID=Lus10006795.BGIv1.0 annot-version=v1.0 ATGAATGGCGGAGGAGGAGACGCCGGTAACAGCTCAATCAAGCGATTAACATCCGAGGCACTTCCCCTGTTCAACGAAGGCATCTATTTGCTTCTCTCCA GATGGTCAGCTCTCCAGCTCGCCATTGAAAACGAGTGGGCCGGCCGCCGCTCCCGTCAGCTCGCCGATCAATTCTCCGCCAATATCTTCTCGTGGTTCAC TGAACCCAAAGCTGAGCCGCTTTATATTGATGATCTGGAACGCGTTTTAGACGAAGGGATGCTTACTCTCAACGTCGATGTTGACGATGGCAGCGTTGAG GAGATAGCTGAGAAATTGATGATTATGCATGAGGAATGTTTGGAAGGGAACTATAGATCCGTTGAGAAGTTGAGAACTGCAGGGCCTGGAGCAGGAATTC ATCAGCATCAAAGAGAGGCTGGAAATGATGATGAATCCTCGTCGGAGGAAGATGACAGTGACGAAGAAGGAGGTATATCAAGTATGCTGGTGGATCAACC AGTTTCTCAGCCAAGGTCGAGTTCAGTGGTCGAGCCGAAGTGTAATGAAGCTCAGGGAGAGGATGATGGGTGGACAGTCGTCTCGTCCACTCGTAGCAAA GGCAGAAGGAAGTAG
AA sequence Show only first row Show all	>Lus10006795 pacid=23150775 polypeptide=Lus10006795 locus=Lus10006795.g ID=Lus10006795.BGIv1.0 annot-version=v1.0 MNGGGGDAGNSSIKRLTSEALPLFNEGIYLLLSRWSALQLAIENEWAGRRSRQLADQFSANIFSWFTEPKAEPLYIDDLERVLDEGMLTLNVDVDDGSVE EIAEKLMIMHEECLEGNYRSVEKLRTAGPGAGIHQHQREAGNDDESSSEEDDSDEEGGISSMLVDQPVSQPRSSSVVEPKCNEAQGEDDGWTVVSSTRSK GRRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	0	1
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	1.7	0.8524
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10028815 [exp]	3.2	0.8432
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	3.5	0.8395
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	5.7	0.8451
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	5.7	0.8477
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	6.5	0.8373
AT4G10810			unknown protein		Lus10022380 [exp]	6.9	0.7689
AT4G32605			Mitochondrial glycoprotein fam...		Lus10034136 [exp]	10.4	0.7650
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	10.9	0.8194
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	11.2	0.8302

Compare expression of checked genes

Lus10006795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.