Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09900 720 / 0 RPN5A, MSA, EMB2107 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) AT5G64760 690 / 0 RPN5B regulatory particle non-ATPase subunit 5B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005804 [exp] 853 / 0 AT5G09900 749 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) Lus10005747 [exp] 106 / 1e-26 ND / Lus10027448 [exp] 99 / 1e-23 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076900 [exp] 772 / 0 AT5G09900 729 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) Potri.005G087100 [exp] 767 / 0 AT5G09900 731 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3) Potri.002G263200 [exp] 48 / 2e-05 AT5G42970 700 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1) Potri.014G180800 [exp] 47 / 3e-05 AT5G42970 695 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10006797 pacid=23150764 polypeptide=Lus10006797 locus=Lus10006797.g ID=Lus10006797.BGIv1.0 annot-version=v1.0 ATGTATAAACTACACTACTATTCCACCAAGAATGTTCTGCTCGCGACATTTTTCTTGATTTGTTTCGTCTCTCCGTATGTTCAAGGAAGGAGAATTCGAG AATTGACGAGTGATGACAAGCATGAAGTAGTATTGGAGAAGGAGTATACTAAGAACTTGGTTAAGGCCGAGGTTCCTTCCATTAGCAGCAGCGAGACGCA ATTGCCGGATTCCGGTGAGAAGAAATTCGAAGGAGGGGTTCAACACAAAGAAACTAAGTTGCCGGTTTCTGATGATCTTGTCGGAGCACAACAAAAACAA ACTAAGTTGCCGGATTCCGGTGAGAAGAAATTAGAAGTAGAGGTTCAACAAAAAGAAACTAAGTTACCGGATTCCGATGACCTTGTCGGGATGGACTATA ATCCGACGAGCAACAAGCCTCCTGACGGAAAAGCTAGTTTGGAGGCGGCGATTGAGCAACTGCAGAATGTGGAGAAGCAGGCGAGGCTCGCCGGCGATGT TGCTGAGACGAGGAAGGCCGTCACCGAAATTCTGCAGTTGTGCTTCGATGCTAAGGACTGGAAGGCGCTGAACGATCAGATTCTCTTGATCTCGAAGAAG CGTGGCCAGCTGAAACAGGCTGTAACTGCAATGGTGCAGCAAGCAATGCAGTACATTGATCAGACACCCGATGTTGAAACTCGGATAGAACTCATTCAGA CTCTTAACAATGTCTCAGCTGGAAAGATCTATGTTGAAATTGAGAGGGCACGTTTGGTTAAAAGACTTGCAAAAATTAAGGAACAACAGGGGCTTGTAGC TGAAGCCGCCGATTTGATGCAAGAAGTTGCGGTTGAGACATTCGGTGCTATGGCCAAGACTGAAAAAATTGCCTTCATACTTGAACAAGTTCGTTTATGT TTAGACAGGCAAGATTATGTACGAGCTCAGATTCTCTCGAGGAGAATCAGCCCTAGGGTATTCGATGTCGATACTTCCAAAGAAAAAAAGAAGCCCAAGG AAGGAGATAACATTGTTGAAGAGGCTCCTGCTGATATTCCGTCCTTGTTAGAATTGAAGAGGATCTACTATGAACTTATGATCAGGTACTACTCCCATAA CAATGACTACCTCGAGATTTTCCGTTGCTACAAGTCAATCTACGACATTCCTTCTGTGAAAGAAGATCCGGCTCAGTGGATACCGGTGCTGAGGAAGATC TGCTGGTACCTGGTATTGGCACCACATGATCCAATGCAGTCGAGCCTTCTGAATTCAACTCTGGAGGATAGAAACCTCTCCGAGATTCCAAAGTTTAAGA CGTTGTTGAAACAAGTGGTGACTATGGAGGTCATTCGATGGACTTCTCTATGGAACACGTACAAGGAAGACTTCGACAGCGAGAAGAACCTGCTGGGAGG ATCGTTAGTGGATAAAGCGGCTGAAGACTTGCAGCAGAGAATAATTGAACACAACATCCTCGTCGTGTCAAAGTACTACGCTAGGATCACTGTGGGGAGA TTGGCGGAGCTTTTGTGTCTTAGCATTGTTGAAACGGAGAAGCACCTTTCGGAGATGGTGGTCTCCAAGGCTTTAATCGCAAAAGTGGACCGGCCAACGG GAGTTGTGAGCTTCCAAGTTGCGAAGGACTCGAATGACATCCTCAACCTATGGTCCTCCAACCTCGAGAAGCTGCTGGAGCTCGTCGAGAAGAGCTGCCA TCAGATCCACAAGGAGACAATGGTGCACAAAGCAGCCTTGAAATGA
AA sequence Show only first row Show all	>Lus10006797 pacid=23150764 polypeptide=Lus10006797 locus=Lus10006797.g ID=Lus10006797.BGIv1.0 annot-version=v1.0 MYKLHYYSTKNVLLATFFLICFVSPYVQGRRIRELTSDDKHEVVLEKEYTKNLVKAEVPSISSSETQLPDSGEKKFEGGVQHKETKLPVSDDLVGAQQKQ TKLPDSGEKKLEVEVQQKETKLPDSDDLVGMDYNPTSNKPPDGKASLEAAIEQLQNVEKQARLAGDVAETRKAVTEILQLCFDAKDWKALNDQILLISKK RGQLKQAVTAMVQQAMQYIDQTPDVETRIELIQTLNNVSAGKIYVEIERARLVKRLAKIKEQQGLVAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLC LDRQDYVRAQILSRRISPRVFDVDTSKEKKKPKEGDNIVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEIFRCYKSIYDIPSVKEDPAQWIPVLRKI CWYLVLAPHDPMQSSLLNSTLEDRNLSEIPKFKTLLKQVVTMEVIRWTSLWNTYKEDFDSEKNLLGGSLVDKAAEDLQQRIIEHNILVVSKYYARITVGR LAELLCLSIVETEKHLSEMVVSKALIAKVDRPTGVVSFQVAKDSNDILNLWSSNLEKLLELVEKSCHQIHKETMVHKAALK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	0	1
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	1.0	0.8271
AT2G30330		BLOS1	BLOC subunit 1, GCN5L1 family ...		Lus10030147 [exp]	3.7	0.8135
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	6.9	0.7996
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	12.1	0.7702
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	12.6	0.7670
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	13.2	0.7783
AT2G37975			Yos1-like protein (.1)		Lus10017192 [exp]	14.3	0.7441
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	18.0	0.7804
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	22.7	0.7717
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10006515 [exp]	22.8	0.7598

Compare expression of checked genes

Lus10006797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.