Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22140 383 / 4e-127 ATEME1B essential meiotic endonuclease 1B (.1) AT2G21800 353 / 2e-115 ATEME1A essential meiotic endonuclease 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005803 [exp] 219 / 4e-69 AT2G22140 183 / 3e-56 essential meiotic endonuclease 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077400 [exp] 435 / 2e-147 AT2G22140 443 / 2e-150 essential meiotic endonuclease 1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF02732 [flax] [poplar] ERCC4 ERCC4 domain
Representative CDS sequence Show only first row Show all	>Lus10006798 pacid=23150743 polypeptide=Lus10006798 locus=Lus10006798.g ID=Lus10006798.BGIv1.0 annot-version=v1.0 ATGGCGGAGAATCCGATCATCCTCTCCGATGAAGACGGCGACGATCCAGTTACTCCGATGCTTCCTCTTTCGAAGAGACTCCAAGCCATTCGAGCGGAGC TCGGACTCAACCCGGCCCCTACGATCTTCCTCATTGACGATGACCCTTCTCCTTTCAAACCAACGCTGAATCCTTCATCTACTCCAAATTTCGTCCCGGA GACTCCGATGTCTGGTGTAGCGGCTGCCAAATGCACGGTGGACCTCTCGTCTCCTGAAACTAGGGTTCCGGATTATGGAAACGCTGGAGCGGTGCCTATG GAAACGGAGTGGTTTGATACAGTAGGTTGCTCCGGAAGTGGAAATCGGCGGGAGGATGTCCCAGACACTCCGATGACTGGTGTAGCTGCTGTCAAATGCA CGGTGGACCTTTCGTCTCCTGAAATAGTTGCTGATTACGGAGATGGTGTAGCGATGCGTTTGGAGAAGGAGCGGGTCGATCCGGTAGGTTGCTCCCGAGG TGGAAATTGGCGGGAGAATGAAACCGTGGAAATTGGTGATGATGATGATGATGATAAAGATAATGAGGTGGAATGGCGGTCTGGATTCTCTGCATCTGCT GATTCACTTGGCGGTCCTAATCTGAGTCAAATGTCTGGGACAAACTCATTATCGTTTGAAGACGATCAGGAAGAGAAGTTGCAAAAAGCAGCTCTGAAAG CTCAAGAGGCAGAGTTGAAAAAGATGGAGAGAGAGACACTGAAATGGACAAAAGGGAAGTTGGCCCTGAAATCAATTGTTGCTCAGTTGGATTCCAAAGT TGTGGAACAGGCTGCCATAGGAGGACATCTCTTGTCCCGGTTTGCTGATAAAGGCCTTAAGTATCATATAGCTTCACATCCGATTGAAAGGTCCATTTTG TGGTCAATGACTGTTCCAGAACATCTTGCCCAGCTCCCTCTACAAGAAAACATTGTCCGATATGTGCTATTTATATACGAGGGGGAGGAATTCTGCAATC GTATAACGAGTGGATCTCTGATAGGTCATATCTCTAAAGTCAGAAGTCAATATCCATCTTATACAATTTGCTATCTCACGAATAAGTTGATGGCTTATAT CAATAAAAGGGAGAAGGAGCAGTACAACAACCCAGATGGTGCTAATGCATGGAAACGTCCACCTATTGAAGAGATGCTGGCAAAATTAACCACCCACTAC GATAAGGTATATTACAGGCACTGTAGAGATGAAGCTGAAGTTGCAGATCATGTGGCGGGTTTGACAAGCAGTTTGGCTTCTTGTCAATACAGAAAGAAGT TAACACGTCTGTCAGTCAATGCCAATGGGTCTGCCGTACCTAAGAATTTCATCGACAAGGATCTGATAAAAAAGAGCCCATGGCTAAAAGCTCTGGTTGC CATTCCCAAGGTGCAGCCTCGTTTTGCTGTTGCTATATGGAAGAAGTATCCTACAATGAAGTCATTGCTCAGGATTTATATGGACCCCAGTAAATCGGTT CATGAAAAGGAGTTCATGCTTGCTAACCTGCCGGCAGAAGGGATTGGAGGCGAAAGGAGAGTTGGTGAAGTAACCTCAAAGCGAGTCTACAGAATACTGA TGGCCGAGTCCGGAAGCATCAGAACCGAAGATGTCGAAAACGGTGCTGATTACTTTCAGCGCTAA
AA sequence Show only first row Show all	>Lus10006798 pacid=23150743 polypeptide=Lus10006798 locus=Lus10006798.g ID=Lus10006798.BGIv1.0 annot-version=v1.0 MAENPIILSDEDGDDPVTPMLPLSKRLQAIRAELGLNPAPTIFLIDDDPSPFKPTLNPSSTPNFVPETPMSGVAAAKCTVDLSSPETRVPDYGNAGAVPM ETEWFDTVGCSGSGNRREDVPDTPMTGVAAVKCTVDLSSPEIVADYGDGVAMRLEKERVDPVGCSRGGNWRENETVEIGDDDDDDKDNEVEWRSGFSASA DSLGGPNLSQMSGTNSLSFEDDQEEKLQKAALKAQEAELKKMERETLKWTKGKLALKSIVAQLDSKVVEQAAIGGHLLSRFADKGLKYHIASHPIERSIL WSMTVPEHLAQLPLQENIVRYVLFIYEGEEFCNRITSGSLIGHISKVRSQYPSYTICYLTNKLMAYINKREKEQYNNPDGANAWKRPPIEEMLAKLTTHY DKVYYRHCRDEAEVADHVAGLTSSLASCQYRKKLTRLSVNANGSAVPKNFIDKDLIKKSPWLKALVAIPKVQPRFAVAIWKKYPTMKSLLRIYMDPSKSV HEKEFMLANLPAEGIGGERRVGEVTSKRVYRILMAESGSIRTEDVENGADYFQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	0	1
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	1.4	0.8090
AT3G22550			Protein of unknown function (D...		Lus10007668 [exp]	2.4	0.7416
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026141 [exp]	4.9	0.7341
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	7.5	0.7375
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	9.4	0.7849
					Lus10027448 [exp]	10.8	0.7592
AT3G15095		HCF243	high chlorophyll fluorescence ...		Lus10013679 [exp]	10.9	0.6951
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	13.3	0.7562
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	15.9	0.7205
AT5G47920			unknown protein		Lus10002566 [exp]	18.2	0.7210

Compare expression of checked genes

Lus10006798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.