Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 427 / 3e-142 Protein kinase superfamily protein (.1) AT1G54610 414 / 4e-139 Protein kinase superfamily protein (.1.2.3) AT1G71530 404 / 2e-136 Protein kinase superfamily protein (.1.2) AT5G50860 399 / 7e-133 Protein kinase superfamily protein (.1) AT5G44290 396 / 3e-131 Protein kinase superfamily protein (.1.2.3.4) AT1G09600 397 / 2e-130 Protein kinase superfamily protein (.1) AT1G74330 393 / 2e-129 Protein kinase superfamily protein (.1.2) AT1G33770 390 / 3e-129 Protein kinase superfamily protein (.1) AT1G18670 391 / 3e-128 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT3G05050 383 / 1e-126 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005801 [exp] 879 / 0 AT1G53050 468 / 2e-157 Protein kinase superfamily protein (.1) Lus10002469 [exp] 498 / 2e-171 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10000584 [exp] 497 / 5e-171 AT1G53050 429 / 1e-142 Protein kinase superfamily protein (.1) Lus10012805 [exp] 423 / 2e-142 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 413 / 1e-138 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 413 / 2e-138 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001285 [exp] 414 / 8e-138 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10004144 [exp] 414 / 2e-137 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 409 / 9e-137 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077600 [exp] 587 / 0 AT1G54610 451 / 8e-153 Protein kinase superfamily protein (.1.2.3) Potri.002G065100 [exp] 523 / 0 AT1G54610 435 / 2e-146 Protein kinase superfamily protein (.1.2.3) Potri.005G086900 [exp] 498 / 3e-172 AT1G53050 323 / 3e-102 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 425 / 1e-143 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 419 / 1e-140 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G226900 [exp] 422 / 2e-140 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 418 / 2e-140 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 417 / 6e-140 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 417 / 2e-138 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 412 / 5e-138 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006800 pacid=23150766 polypeptide=Lus10006800 locus=Lus10006800.g ID=Lus10006800.BGIv1.0 annot-version=v1.0 ATGGGGTGCATCCAATCAAGCAAGCGGCGACGGAAGCAGCCGCCGGCGTGGGGTCCAAGTACTCTGCCGTCCAACCATGAGAAAGAGGGTAGCAAGAATA GTAAGGATCACTTGGATAATGCTGTTAAGGCGGCGGCGGTGGAGGTGGCGGCGGTTGGCGGCGGCGGCGGGAAGAAGGGTCAGAAAGTGGTGTTGAAGAA GATCGGTACGGATGATTACGTGGATGGTTGGCCGAAGTGGCTTGTTGATAATATACCGAAAGATGTGTTGGCTGGTTTGGTCCCCAAAAGTGCTGATTCT TATGATAAGCTTGCCAAGATTGGTCAAGGAACTTACAGCAATGTGTACAAAGCTAGAGACAGAGACAGTGGGAAGATTGTGGCATTGAAGAAAGTCAGGT TCGACACCTCCGAACCAGAGAGCATCAAGTTCATGGCTAGGGAGATTATGGTTCTTCAGAAACTCGATCATCCGAACATCATCAAACTCGAAGGAATCGC CACTTCAAGGATGCAATATAGCCTCTATCTCGTGTTCGACTACATGCAGTCCGACCTGACCCGAATTATCTCTCGTCCCTCGCAACGACTCACCGAGCCA CAGGTGAAATGCTACATGAAGCAGCTTCTCATGGGGCTACAGCACTGCCACGAGAGAGGGATCCTACACAGGGACATCAAAGGTTCGAATCTGTTGATAG ACAAAAATGGGATGCTAAAGATAGCCGATTTCGGGCTAGCGAATTTCTTCGTCCCCAAGCCGAAACGACCATTGACCACAAGGGTCGTCACATTATGGTA CAGGGCTCCAGAGCTTCTTCTTGGAGCCACAGACTATGGCGTCGGGATTGATCTCTGGAGTGCTGGTTGTCTGTTGGCTGAAATGTTCGTCGGGAGGCCG ATCATGCCTGGCAGAACTGAGGTTGAGCAAATACACAGGATATTCAAGCTGTGTGGCTCACCGGCGGAGGACTACTGGAAGATAATGAGGCTTCCGACGA GTTTCCGGCCACCACAACACTACAAACCGAGTTTCCAGGAATCGTTCAAGGACATGCCAGCTTCCTCGATTGCCCTCCTCACAACTCTTCTCTCTCTCAA CCCTTCATATCGTGGAACTGCTACTTCTGCTCTCCAAACCCAGATGGAGAAGATGTCAGAAGCAAGCACAACACACAGCCAAGAAGAAAACACAACAGCA ACAAGCATATTCAGCCAAGAAGCAACAGGAGGCAACAGCACTAGCAGCAGCACAAGTTCAAGCCTCAAACCAGTGAGAGAAGAGGAACAAGAAGAAGAAG ATCATAAGAAACACCGTTGCCGCCACCCTTCATTCTCGCCGGTGGAACGACGTTCACAGCTCCGGGACCGGTCCCACCGGACCGAGGCGCATCCCAATGC TTCTAAGAACATCCAGAACAACTTCACCCTTCTACAGGCCTCGGTCTCGGACATCCTCAACCCCCACCACAGTGTTAAGGCAGGAGGAGGAGTCAACGGC GGGGGAATGCAGAACTACCGCCGGTCGATGTCCACGCTGGAGTTTTGTGCTCTGGATCCTGACAAGATCTCCAAGCTCTTTGGACTTGATGATAACCATA GAGGCCAACTTCTGCATAAGTCCAGCTTCAATATGTAG
AA sequence Show only first row Show all	>Lus10006800 pacid=23150766 polypeptide=Lus10006800 locus=Lus10006800.g ID=Lus10006800.BGIv1.0 annot-version=v1.0 MGCIQSSKRRRKQPPAWGPSTLPSNHEKEGSKNSKDHLDNAVKAAAVEVAAVGGGGGKKGQKVVLKKIGTDDYVDGWPKWLVDNIPKDVLAGLVPKSADS YDKLAKIGQGTYSNVYKARDRDSGKIVALKKVRFDTSEPESIKFMAREIMVLQKLDHPNIIKLEGIATSRMQYSLYLVFDYMQSDLTRIISRPSQRLTEP QVKCYMKQLLMGLQHCHERGILHRDIKGSNLLIDKNGMLKIADFGLANFFVPKPKRPLTTRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFVGRP IMPGRTEVEQIHRIFKLCGSPAEDYWKIMRLPTSFRPPQHYKPSFQESFKDMPASSIALLTTLLSLNPSYRGTATSALQTQMEKMSEASTTHSQEENTTA TSIFSQEATGGNSTSSSTSSSLKPVREEEQEEEDHKKHRCRHPSFSPVERRSQLRDRSHRTEAHPNASKNIQNNFTLLQASVSDILNPHHSVKAGGGVNG GGMQNYRRSMSTLEFCALDPDKISKLFGLDDNHRGQLLHKSSFNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10006800 [exp]	0	1
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	4.2	0.9283
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	8.7	0.8956
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	10.4	0.8949
					Lus10007903 [exp]	12.5	0.8327
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	12.8	0.8920
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	15.3	0.8910
					Lus10032472 [exp]	15.5	0.8901
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	19.2	0.8773
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	20.6	0.8782
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	21.5	0.8800

Compare expression of checked genes

Lus10006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.