Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39520 609 / 0 GTP-binding protein-related (.1) AT1G17470 363 / 6e-123 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 363 / 9e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G18570 68 / 5e-12 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G07615 57 / 1e-08 GTP-binding protein Obg/CgtA (.1) AT5G66470 51 / 1e-06 RNA binding;GTP binding (.1) AT1G56050 49 / 7e-06 GTP-binding protein-related (.1) AT1G30580 48 / 7e-06 GTP binding (.1) AT1G50920 48 / 1e-05 Nucleolar GTP-binding protein (.1) AT1G80770 43 / 0.0002 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005800 [exp] 653 / 0 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10015662 [exp] 366 / 6e-124 AT1G72660 760 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10037676 [exp] 362 / 3e-122 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10034166 [exp] 70 / 2e-12 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 69 / 3e-12 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10024297 [exp] 68 / 5e-12 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 57 / 2e-08 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 56 / 4e-08 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10038748 [exp] 51 / 1e-06 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080900 [exp] 626 / 0 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.003G063500 [exp] 372 / 3e-126 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 369 / 3e-125 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G029600 [exp] 68 / 6e-12 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.010G022400 [exp] 67 / 9e-12 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 55 / 6e-08 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.001G457900 [exp] 48 / 1e-05 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.001G465900 [exp] 48 / 1e-05 AT1G30580 681 / 0.0 GTP binding (.1) Potri.011G164000 [exp] 47 / 1e-05 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G258900 [exp] 47 / 2e-05 AT1G50920 999 / 0.0 Nucleolar GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain
Representative CDS sequence Show only first row Show all	>Lus10006801 pacid=23150736 polypeptide=Lus10006801 locus=Lus10006801.g ID=Lus10006801.BGIv1.0 annot-version=v1.0 ATGGCGACCGTGATGCAGAAGATCAAGGACATCGAAGATGAGATGGCCAAGACGCAGAAGAATAAGGCCACAGCTCATCATCTTGGCTTGCTCAAGGCTA AGCTTGCAAAGCTCCGTAGAGAGCTGCTTGAGCCTCCATCAAAGGGAGGTGGCGGTGCTGGGGCAGGTTTTGACGTTACTAAAAGTGGAGATGCTAGGGT TGGTCTCGTGGGGTTTCCATCCGTTGGGAAGTCCACCCTTCTGAATAAGCTAACCGGGACGTTTTCGGAGGTTGCTTCTTATGAATTTACAACTTTGACT TGCATACCTGGTGTTATTGTGTATAGAGGAGCCAAGATTCAGTTGCTAGATCTCCCTGGAATTATTGAGGGTGCTAAGGATGGAAAGGGTCGAGGAAGGC AGGTTATTAGTACTGCCAGGACTTGCAACTGTATCATAATTGTTCTTGATGCCATAAAGCCAATTACTCATAAGCGTCTCATTGAAAAAGAGCTTGAGGG ATTCGGAATCAGGCTGAACAAGGAGCCACCAAATCTAACATTCAGAAAGAAGGAGAAGGGTGGAATCAATTTTACATCAACAGTTACCAACACAAATCTT GATCTCGAAACTGTCAAGGCAATATGCAGTGAATACCGAATTCATAATGCTGATGTCACTTTGAGGTATGATGCGACAGCCGATGATCTGATCGATGTCA TTGAGGGGAGTAGGGTGTATATACCGTGCATCTATGCTCTGAACAAGATTGATCAGATCACTCTCGAAGAGCTGGAGATATTGGACAAACTTCCCCACTA CTGCCCAGTCAGTGCTCACCTGGAGTGGAACTTGGACGGGTTGCTGGACAAGATATGGGAGTATCTCGACCTGACTCGTATTTATACAAAGCCGAAAGGT ATGAATCCAGATTACGAAGACCCCGTCATTCTGTCATCTAAAAGACGCACCGTCGAGGACTTCTGCGACCGGATTCACAAGGACATGTCTAAACAATTCA AGTATGCATTAGTATGGGGATCGAGCGCCAAACACAAACCTCAAAGAGTCGGAAAGGTACACCTTTTCATAGCCTCAGGCATTGGTTCTTTTGCCGTTGT GTATCATCGAGCTGACCGATTTCTTGGGAAACGTGACAGGAACACGAGCTCGAGGACGAAGACGTGGTGCAGATCATCAAGAAGGTGTGAGGATCGCATG ATACAGCAATTTCCTCAGCACGGCCTTCTTTTTGTATCATTACCAAGTAGAAACCGAATTGAGCCGCCTTACCGGCATGTGGATTGTTGTCTTGTTAGTA GTAGACAGAGAAGTGAGAATGTTCGAGTTTCTTTTGAACATGGTATCATCCAAGTCATCTAG
AA sequence Show only first row Show all	>Lus10006801 pacid=23150736 polypeptide=Lus10006801 locus=Lus10006801.g ID=Lus10006801.BGIv1.0 annot-version=v1.0 MATVMQKIKDIEDEMAKTQKNKATAHHLGLLKAKLAKLRRELLEPPSKGGGGAGAGFDVTKSGDARVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLT CIPGVIVYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCIIIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKEKGGINFTSTVTNTNL DLETVKAICSEYRIHNADVTLRYDATADDLIDVIEGSRVYIPCIYALNKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLDKIWEYLDLTRIYTKPKG MNPDYEDPVILSSKRRTVEDFCDRIHKDMSKQFKYALVWGSSAKHKPQRVGKVHLFIASGIGSFAVVYHRADRFLGKRDRNTSSRTKTWCRSSRRCEDRM IQQFPQHGLLFVSLPSRNRIEPPYRHVDCCLVSSRQRSENVRVSFEHGIIQVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39520			GTP-binding protein-related (....		Lus10006801 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10019028 [exp]	1.0	0.9189
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	3.0	0.8964
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	6.5	0.9001
AT1G16810			unknown protein		Lus10026960 [exp]	7.7	0.8710
AT3G43520			Transmembrane proteins 14C (.1...		Lus10011926 [exp]	7.9	0.8240
AT1G15230			unknown protein		Lus10035871 [exp]	10.4	0.8029
AT1G02020			nitroreductase family protein ...		Lus10030289 [exp]	12.6	0.8084
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10014277 [exp]	13.2	0.8018
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	15.0	0.8680
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	15.4	0.8134

Compare expression of checked genes

Lus10006801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.