Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 253 / 3e-78 Plant protein of unknown function (DUF247) (.1) AT3G50170 244 / 6e-75 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 241 / 4e-74 Plant protein of unknown function (DUF247) (.1) AT3G50160 238 / 1e-72 Plant protein of unknown function (DUF247) (.1) AT3G50140 230 / 1e-69 Plant protein of unknown function (DUF247) (.1) AT3G50130 223 / 1e-66 Plant protein of unknown function (DUF247) (.1) AT3G50180 213 / 1e-62 Plant protein of unknown function (DUF247) (.1) AT3G50190 197 / 2e-57 Plant protein of unknown function (DUF247) (.1) AT5G22540 184 / 4e-53 Plant protein of unknown function (DUF247) (.1) AT2G36430 169 / 1e-47 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011501 [exp] 270 / 8e-85 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10005799 [exp] 210 / 3e-66 AT3G50150 61 / 3e-11 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 166 / 2e-46 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 159 / 2e-43 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 154 / 1e-41 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 153 / 2e-41 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 149 / 9e-40 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 145 / 2e-38 AT4G31980 251 / 5e-76 unknown protein Lus10027719 [exp] 137 / 2e-35 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071400 [exp] 512 / 6e-180 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 496 / 1e-173 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 494 / 2e-173 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 488 / 4e-171 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G071200 [exp] 445 / 8e-154 AT3G50120 244 / 1e-74 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 256 / 1e-79 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 189 / 1e-54 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 176 / 3e-50 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 175 / 1e-49 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 174 / 4e-49 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10006802 pacid=23150758 polypeptide=Lus10006802 locus=Lus10006802.g ID=Lus10006802.BGIv1.0 annot-version=v1.0 ATGGCAGCAACAAATTGGGTGGTTGAGATCACCGAAAAGCTCCAAGCCAGCGCGACAGTCAACCCGACAGAAAATCAGGAATCTCACTGGAAGAAGCAAT CCATCTACAAGATCCCGTTATGTGTCACGGACCTAAGCAAAAAGGCTTACAAACCACAATCCGTCTCCTTTGGCCCTTACCACCACGGTCGTGACCACCT CAAGCCCATGGAGCAACACAAGCAAAGAGCATTGCTCCATTTCCTGAGGAGGGCGAATAAGCCTCTCCAGGCCTTCGTCGATGTTGTCAGGGAGGTGGTT GGGGTGCTTCGAGACTCGTATAGCCCTCTTGAAGCGATGTGGAAGGAGGGTGGTGATGAGGAGGGGTTGCTGAAGCTGATGATCGTTGATGGGTGTTTTA TGTTGGAGGTTTTGCGGATTGGTACACATACTTTGGATGATTATGCAATGAATGACCCAGTTTTTAGTGGTCACGGGAGGCTCTACATTATGCCCTATAT AAGGCGTGACATGTTAATGCTTGAAAATCAGTTGCCTATGTTGCTACTTGACAAGCTGATTGCTGTTGAGAGCAATGGTACCAAGGATGAGGAGTTTGTG AACAAGCTCATACAAAAATTCTGCCTACCAAACACGCCCGTAGCCCGTCTAGGCAATTGCAAGCACGTGGTCGATGCTTACAGGAAGAGCCTCCTCCACC AGGATGAGATCCGCTCGAAAAAAATCGGACCTCGTCGCCGTCGTCGTCCCCCGCGCTATAAAGCGGAGGACGACATTGTCCGTTCAGCGACGGAGTTGCA CGAAGCTGGAATCCAGTTCAAAAGGAGCAGAACCGGAAGCCTGAAAGACATCTCGTTCAAACGAGGTGTCCTCAGGCTTCCGGTGATTGTGGTTGACGAC ACCACAGAGTTTGTCTTCCTCAACTTGATCGCCTACGAGCGGTTCCACGTTGGCGCAGGGAACGAGGTCACATCCTACATCTTCTTCATGGACAAGATCA TAGACAGCGAGCGAGATGTGGCTCTCCTAACCTCGCAAGGGATCATCCAGAACGCAGTAGGGAGCGACAAAGCGGTGGCCAAGCTTTTCAACTCGATGTC AAGGGACATCACGCTCGACCCGGAGAGCAGTCTGGAGGTGGTGCACAAGAGAGTGAGTGCCTATTGCAGGAAGCCATGGAATGAGTGGAGAGCTAACTTG ATCCACACTTACTTTAGGAATCCATGGGCAATTTTGTCACTGGTTGCTGCATTCTTCTTGTTTGCTCTCACCATTGCTCAGACTATATACACCATCTACC CTTACTACCATTCCGACGGTGGATCGGCCGCCACTCCGGATGCAAGGGCTCCAACTCCAAGGGTGGTGCCACGGCCTAATTGA
AA sequence Show only first row Show all	>Lus10006802 pacid=23150758 polypeptide=Lus10006802 locus=Lus10006802.g ID=Lus10006802.BGIv1.0 annot-version=v1.0 MAATNWVVEITEKLQASATVNPTENQESHWKKQSIYKIPLCVTDLSKKAYKPQSVSFGPYHHGRDHLKPMEQHKQRALLHFLRRANKPLQAFVDVVREVV GVLRDSYSPLEAMWKEGGDEEGLLKLMIVDGCFMLEVLRIGTHTLDDYAMNDPVFSGHGRLYIMPYIRRDMLMLENQLPMLLLDKLIAVESNGTKDEEFV NKLIQKFCLPNTPVARLGNCKHVVDAYRKSLLHQDEIRSKKIGPRRRRRPPRYKAEDDIVRSATELHEAGIQFKRSRTGSLKDISFKRGVLRLPVIVVDD TTEFVFLNLIAYERFHVGAGNEVTSYIFFMDKIIDSERDVALLTSQGIIQNAVGSDKAVAKLFNSMSRDITLDPESSLEVVHKRVSAYCRKPWNEWRANL IHTYFRNPWAILSLVAAFFLFALTIAQTIYTIYPYYHSDGGSAATPDARAPTPRVVPRPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10006802 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	4.2	0.8708
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	17.4	0.8660
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	19.3	0.7795
AT1G01490			Heavy metal transport/detoxifi...		Lus10024672 [exp]	21.3	0.7604
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	24.5	0.8270
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	27.1	0.8246
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10040300 [exp]	28.0	0.8202
					Lus10012132 [exp]	43.5	0.8050
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10035526 [exp]	44.7	0.7610
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	50.2	0.7961

Compare expression of checked genes

Lus10006802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.