Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64840 912 / 0 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 842 / 0 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT5G60790 205 / 1e-57 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT1G64550 202 / 1e-55 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT3G54540 182 / 1e-48 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT1G63270 70 / 3e-13 ABCI1, ATNAP10 ATP-binding cassette I1, non-intrinsic ABC protein 10 (.1) AT1G27940 73 / 5e-13 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT2G36910 73 / 7e-13 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G28010 71 / 2e-12 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G13090 69 / 1e-11 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005798 [exp] 1179 / 0 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10038681 [exp] 199 / 3e-55 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 201 / 6e-55 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10023043 [exp] 202 / 3e-54 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10028810 [exp] 196 / 3e-54 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10016184 [exp] 191 / 2e-51 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10029363 [exp] 190 / 3e-51 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10037947 [exp] 179 / 1e-47 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10005249 [exp] 81 / 3e-15 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080600 [exp] 952 / 0 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 937 / 0 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.004G214300 [exp] 198 / 5e-55 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.009G007800 [exp] 194 / 2e-53 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.001G087300 [exp] 193 / 2e-52 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.008G003300 [exp] 192 / 4e-52 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.010G254400 [exp] 188 / 9e-51 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.017G081100 [exp] 78 / 2e-14 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.006G211700 [exp] 77 / 2e-14 AT5G03910 709 / 0.0 ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATP-binding cassette B29, ABC2 homolog 12 (.1) Potri.016G093600 [exp] 75 / 1e-13 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10006804 pacid=23150765 polypeptide=Lus10006804 locus=Lus10006804.g ID=Lus10006804.BGIv1.0 annot-version=v1.0 ATGGAGCTCTCCTCGAAGCTCCACCACCACCTTCACTACTCAACACTCTTCCCCACCTCACTCCCGCCGAATTCCAATCTCCACAAACAAGCTCGAACGG CGGCGATCTTCCCCAGCTCAACCAGGCGGAATCTCAAGCTCAGCGCTTCAGCAAGGCTGTCCACCGCCGCCGTCGAAGAAAAAGTTGATATTGAAGACAT CGAATCGCTGTTCTCTTCGAACAATTCTGCTGACGAGCAGAGGAATAGGAGTAGTAATCAAAATCAGAACAAGGCTTCCGCGGGAGCTTCTGGGATTACG TCAGGGGTTAAGCTTGAGAATATTAGTAAGAGTTATAAAGGGACGACGGTGTTGAAGGATGTCAGTTGGGAAGTGAAGAAAGGGGAGAAAGTAGGGTTAG TTGGTGTTAATGGAGCTGGGAAAACTACTCAGTTGAGGATCATCACTGGCCAGGAAGAGGCGGACAGTGGGAACGTGATCAAGGCGAAACCGAACATGAA GATTGCGTTCTTGAGCCAGGAGTTTGAGGTATCTCTGACCAAAACCGTTAGGGAGGAGTTTCTGAGTGCTTTCAAAGAGGAGATGGAGGTTAAGGAGAAG CTGGAGAAAGTTCAGAAGGCGATCGAGAGGTCCGTGGATGATTTGGAGCTGATGGGGAGGCTGTTGGATGAGTTTGATCTTCTGCAGACGAGAGCTCAGG GTTTGAACTCAGATGTCGTGGATGCTAAGGTTAGTAAGTTGATGCCGGAGCTTGGATTCTCCAGCGAGGATGGTGATCGGTTGGTGGCTTCTTTTAGCGG CGGGTGGCAGATGAGGATGTCGCTTGGAAAGATTCTTTTGCAGGAACCGGATCTGCTGCTTCTCGATGAGCCCACGAATCATCTCGACCTTGACACGATT GAGTGGCTTGAAAGCTATCTGCAGACACAAGATGTGCCAATGGTGATCATTTCCCATGACAGGGCATTCCTGGATCAACTGTGTACGAAGATCGTGGAAA CTGAAATGGGAGTGTCTCGGACGTTTGATGGGAACTATTCACAGTACATAATCTCAAAGGCTACTTGGATCGAAGCTCAGAATGCTGCATGGGAGAAGCA GCAGAAGGAGATTGAGCATACTAGGGAACTGATAAGTAGGTTGGGCGCTGGTGCTAACTCAGGCCGTGCTTCTACAGCGGAGAAGAAATTGGAGAGACTG AAAGAAGAGGACCAGATAGAGAAGCCGTTTCAACGCAAGCAAATGAAGATCAGTTTCCCAGAACGTGGGAGAAGTGGAAGGTCTGTAGTTGAAATCAAGA ACCTCGACTTCCGGTATGGGGATCAGACGTTGTTCAAGAACACGAATCTGTCGGTAGAGCGAGGAGAGAAGATCGCCATTGTTGGACCGAACGGATGCGG GAAGAGTACTTTGCTGAGAGTCATAATGGGGACGGAGAAGCCAACAGGAGGCGAGATTGTACTCGGAGAGCACAATGTACTTCCAAACTACTTTGAGCAG AACCAGGCTGAGGCTCTTGATCTCGAAAAATCGGTGCTTGACACAGTGGCGGATGTTGCAGAAGATTGGAGGCTAGATGACATTAAAGGTCTCCTTGGAC GTTGTAACTTCAAGGCTGATATGCTTGATAGAAAGGTCTCTCTTTTGAGTGGTGGCGAGAAGGCACGTTTGGCATTCTGTAAGTTCATGGTGAAGCCTTC GACTTTGCTAGTCCTCGACGAACCTACAAATCACTTGGATATACCTTCGAAAGAAATGCTCGAGGAAGCCATAGCAGAATACACAGGCACGGTCATCACC GTGTCTCACGATCGTTACTTCATAAAGCAGATTGTCAACAGAGTAATTGAAGTTCAAGATTGCAAGTTACAGGACTACAATGGCGATTACAACTATTACT TGGAGAAGAACCTCGAAGCAAGGGAGAAAGAGCTCGAACGAGAGGCGATGATCGAGGACAAGGCCCCCAAAGTGAAGGCGAAATCGAAGATGTCCAAGGC CGAGAAGGAAGCGAGGAAGAAGCAGAAAGTGCAGGCGTTCCATGCTGCGAAGCAGAAGTCGAAAGGGTCGAAGAATTCGAAGAGATGGAACTGA
AA sequence Show only first row Show all	>Lus10006804 pacid=23150765 polypeptide=Lus10006804 locus=Lus10006804.g ID=Lus10006804.BGIv1.0 annot-version=v1.0 MELSSKLHHHLHYSTLFPTSLPPNSNLHKQARTAAIFPSSTRRNLKLSASARLSTAAVEEKVDIEDIESLFSSNNSADEQRNRSSNQNQNKASAGASGIT SGVKLENISKSYKGTTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIITGQEEADSGNVIKAKPNMKIAFLSQEFEVSLTKTVREEFLSAFKEEMEVKEK LEKVQKAIERSVDDLELMGRLLDEFDLLQTRAQGLNSDVVDAKVSKLMPELGFSSEDGDRLVASFSGGWQMRMSLGKILLQEPDLLLLDEPTNHLDLDTI EWLESYLQTQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYIISKATWIEAQNAAWEKQQKEIEHTRELISRLGAGANSGRASTAEKKLERL KEEDQIEKPFQRKQMKISFPERGRSGRSVVEIKNLDFRYGDQTLFKNTNLSVERGEKIAIVGPNGCGKSTLLRVIMGTEKPTGGEIVLGEHNVLPNYFEQ NQAEALDLEKSVLDTVADVAEDWRLDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIAEYTGTVIT VSHDRYFIKQIVNRVIEVQDCKLQDYNGDYNYYLEKNLEAREKELEREAMIEDKAPKVKAKSKMSKAEKEARKKQKVQAFHAAKQKSKGSKNSKRWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	0	1
AT3G19900			unknown protein		Lus10029066 [exp]	1.7	0.9034
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	4.2	0.8839
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10021273 [exp]	6.0	0.8770
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	6.5	0.9014
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10022301 [exp]	8.2	0.8664
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	10.6	0.8925
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	13.2	0.8940
AT1G28140			unknown protein		Lus10041480 [exp]	13.8	0.8423
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	14.4	0.8802
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	18.5	0.8106

Compare expression of checked genes

Lus10006804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.