Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64813 419 / 4e-145 LIP1 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) AT5G09910 381 / 3e-130 Ras-related small GTP-binding family protein (.1) AT5G09920 241 / 2e-78 NRPB4, ATRPB15.9, RPB15.9.9, RPB15.9 RNA polymerase II, Rpb4, core protein (.1) AT1G49300 72 / 2e-14 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT4G15950 71 / 7e-14 RDM2, NRPE4, NRPD4 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) AT1G43890 70 / 2e-13 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT4G09720 69 / 3e-13 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT3G18820 67 / 1e-12 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT1G52280 67 / 1e-12 AtRABG3d RAB GTPase homolog G3D (.1) AT3G16100 66 / 3e-12 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005795 [exp] 576 / 0 AT5G64813 501 / 9e-177 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Lus10005796 [exp] 308 / 1e-104 AT5G09920 243 / 6e-84 RNA polymerase II, Rpb4, core protein (.1) Lus10038766 [exp] 82 / 2e-17 AT4G15950 140 / 2e-41 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) Lus10039097 [exp] 75 / 2e-15 AT4G15950 124 / 7e-36 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) Lus10040468 [exp] 70 / 1e-13 AT3G18820 403 / 2e-145 RAB GTPase homolog G3F (.1) Lus10029745 [exp] 71 / 6e-13 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 71 / 1e-12 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10035872 [exp] 67 / 2e-12 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10022608 [exp] 61 / 2e-10 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085100 [exp] 460 / 3e-161 AT5G64813 476 / 4e-170 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Potri.007G080100 [exp] 422 / 2e-146 AT5G64813 439 / 4e-155 Light Insensitive Period1, Ras-related small GTP-binding family protein (.1) Potri.005G084900 [exp] 247 / 9e-81 AT5G09920 269 / 1e-94 RNA polymerase II, Rpb4, core protein (.1) Potri.007G080400 [exp] 247 / 9e-81 AT5G09920 269 / 1e-94 RNA polymerase II, Rpb4, core protein (.1) Potri.016G003200 [exp] 82 / 1e-17 AT4G15950 150 / 4e-46 RNA-DIRECTED DNA METHYLATION 2, RNA polymerase II, Rpb4, core protein (.1) Potri.009G115000 [exp] 71 / 7e-14 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.004G153400 [exp] 70 / 1e-13 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.002G074400 [exp] 67 / 1e-12 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.005G085300 [exp] 66 / 3e-12 AT4G09720 291 / 3e-101 RAB GTPase homolog G3A (.1.2.3.4) Potri.001G182900 [exp] 66 / 3e-12 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0426 [flax] [poplar] HRDC-like PF03874 [flax] [poplar] RNA_pol_Rpb4 RNA polymerase Rpb4 CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10006805 pacid=23150738 polypeptide=Lus10006805 locus=Lus10006805.g ID=Lus10006805.BGIv1.0 annot-version=v1.0 ATGTTTTGGCGCGATCGTGAAAGGGATAGCAAGGATCTTCTTAATGGCGGACCTCCGTGTGGCCTGGTTCGAGTTCTTGTTGTTGGAGATTCAGGGGTGG GGAAAACTTCTCTGGTTAATCTGATGGTCAAAGGCTCTTCATCGGCTCGCCCTTCTCAGACAATTGGATGCAATGTTGATGTCAAGCACATTACTTACAG TAGTAGTGGCAGCTCTTCAAGCAGCACAAAAGGCGATGGTGGTGAGAGAGATTTCTTCGTGGAGCTCTGGGATGTATCTGGACATGAGCGTTACAAAGAC TGCAGATCTCTTTTCTATTCCCAAATTAATGGAGTTATATTTGTTCACGATCTCTCACAGAGAAGGACAAAGACAAGCTTGCTAAAATGGGCTTCAGAAG TTTCTGCAACGGGGACATTTTCAGCTCCACTGGGTTCCGGGGGTCCTGGTGGTCTCCCTGTACCTTACATTGTCATCGGAAACAAAGCTGACGTTGCAGC AAAGGAAGGCACAAGGGGAAGCAGTAGCAACCTGGTCGATGCAGCTCGCCAGTGGGTCGAGAAGCAAGGCCTACTTCCGACCAGTGAGGAACTCCCTTTG ACCGACAGTTTCCCAGGCAGTGCAGGGCTCCTTGCAGCTGCCAAAGAAGCAAGATATGACAAGGAAGCTGTGGCCAAGTTTTTCCGTATGTTAATCCGAA GAAGATACTTCTCGAACGAGTTACTCACTCCGAATTCATGGTCAGTTTCTTCAGCTCAGGGATCACAGCAGCGTCTCGATGAAAGTATCGGCGACGAGGA CCCATTCTACAAGAGCACAAGTCTAGTTGGAGACCCTTACAAGTACAACAATCTGCCTCCGCTGCCTGCACAGCGCAATCTCACCCCTCCTCCCACGCTC TATCCTCAGCAGCCAGTTTCGGCAATGGAGAACTACAGCTTCCCGAGATTCCCCTCGTTGAGCTCGCAAGAAATCAGCAGCAGTAGCAGTGCGAGGTCGA AACGTATGTCAGGAGAAGAGGAAGAGAATGCTGCGGAGCTCAAAATCGGAGATGAGTTCTTGAAGGCGAAATGCTTGATGAATTGTGAGGTTTCTTTGAT TCTTGAGCACAAGTATGAGCAGCTTCAACAAATGTCGGATGATGCGACGAATCAGATGTCCCAGGTGTTTGAGAAATCGCTGCAGTATGTGAAGCGCTTT AGCCGATACAAAAACCCTGATGCTGTCAGACAAGTGCGAGAAATCCTAAGCCGATACCAGCTGGCAGAGTTTGAGGTGAAGTTGCTCGTCAATCCAGTGA TCTGCAACTTCCATCTGCTCTGTGTGCTTGGTAATCTCTGCCCTGAAACTGTGGAGGAAGCAACAACGATGGTTCCTTCTCTAAAGACAAAGGATCGGTC CCTTGACGATGATGCGATTGAGAAAATGCTGAATGATCTATCGTTGATCAAGAAGTTCGAGTAG
AA sequence Show only first row Show all	>Lus10006805 pacid=23150738 polypeptide=Lus10006805 locus=Lus10006805.g ID=Lus10006805.BGIv1.0 annot-version=v1.0 MFWRDRERDSKDLLNGGPPCGLVRVLVVGDSGVGKTSLVNLMVKGSSSARPSQTIGCNVDVKHITYSSSGSSSSSTKGDGGERDFFVELWDVSGHERYKD CRSLFYSQINGVIFVHDLSQRRTKTSLLKWASEVSATGTFSAPLGSGGPGGLPVPYIVIGNKADVAAKEGTRGSSSNLVDAARQWVEKQGLLPTSEELPL TDSFPGSAGLLAAAKEARYDKEAVAKFFRMLIRRRYFSNELLTPNSWSVSSAQGSQQRLDESIGDEDPFYKSTSLVGDPYKYNNLPPLPAQRNLTPPPTL YPQQPVSAMENYSFPRFPSLSSQEISSSSSARSKRMSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSDDATNQMSQVFEKSLQYVKRF SRYKNPDAVRQVREILSRYQLAEFEVKLLVNPVICNFHLLCVLGNLCPETVEEATTMVPSLKTKDRSLDDDAIEKMLNDLSLIKKFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10006805 [exp]	0	1
AT2G14045			unknown protein		Lus10042548 [exp]	1.0	0.8500
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	3.5	0.8086
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	4.2	0.8128
AT1G07980	CCAAT	NF-YC10	"nuclear factor Y, subunit C10...		Lus10036110 [exp]	6.0	0.7645
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10015840 [exp]	8.1	0.7580
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	9.9	0.8008
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	11.4	0.8011
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	11.7	0.7952
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	12.8	0.8051
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	13.4	0.7819

Compare expression of checked genes

Lus10006805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.