Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17250 996 / 0 Alkaline-phosphatase-like family protein (.1) AT2G21870 287 / 2e-89 MGP1 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) AT2G22530 148 / 6e-36 Alkaline-phosphatase-like family protein (.1) AT3G01380 54 / 8e-07 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005793 [exp] 1715 / 0 AT5G17250 1088 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10005794 [exp] 445 / 4e-148 AT2G21870 320 / 2e-111 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Lus10012682 [exp] 359 / 1e-115 AT2G21870 320 / 1e-111 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Lus10025722 [exp] 165 / 3e-41 AT2G22530 1008 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10035939 [exp] 77 / 7e-14 AT2G22530 410 / 1e-129 Alkaline-phosphatase-like family protein (.1) Lus10039473 [exp] 44 / 0.0007 AT3G01380 1466 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059300 [exp] 1145 / 0 AT5G17250 1095 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.005G085500 [exp] 320 / 2e-101 AT2G21870 322 / 2e-112 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Potri.007G079500 [exp] 319 / 7e-101 AT2G21870 343 / 1e-120 MALE GAMETOPHYTE DEFECTIVE 1, copper ion binding;cobalt ion binding;zinc ion binding (.1.2) Potri.007G010600 [exp] 173 / 8e-44 AT2G22530 941 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.001G350700 [exp] 44 / 0.0008 AT3G01380 1392 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10006806 pacid=23150760 polypeptide=Lus10006806 locus=Lus10006806.g ID=Lus10006806.BGIv1.0 annot-version=v1.0 ATGGCGTTCACTTCTCGCCTCCTGTTCAGATCCAGACAGCTCTATGGCACTCAGGTTGTTTTCCAGCATGAGTCTGCGATTCCAGCTCGTTACTTTTCGG CAAAATCTGACCCTCAGCCAAAGTCTCTGAAGGGAGATGATATGCTCAAGAACATTTTCATGGAAGTGAAGAAAAAGTATGAGACGGCAGTGGGAGTACT TCGACAGGAGAAGATAATCATAGCACCTGAAGATCCTGCTGCTGTTGCTCAATATGTAAAGGTCATGAAGAGTGTCAGGCAGAAGGCTGACTTGTTATCT GAATCTCAGAGCATCAAGAACACCATTGTCGAAGAAACTAAAGATATTCCAGATGCTCGCTCTTACTTGCTGAAATTGCAGGAACTGCGAATTAATCAAG GTTTGAAAGATGACCTTGGTGCCGAAGCAATGATGATGGATGCCTTGGAAAAAATTGAGAAAGAAGTCAAGAAACCTCTTATGAGGAATGATAAGAAAGG AATGGCTCTTCTCATGGCTGAGTTCGATAAGATCAACCAGAAGCTCGGAATTAAGAGAGAAGAGCTGCCAAAGTATGAAGAACAGTTGGAAGTCAAAATG GCTAAAGCACAGCTAGAGGAGCTGAAGAAAGATGTCCACGAAGCTATGGAAACCCAGAAGAAACGCAAACTAAAGATGGAAGCGAGGTGGATAAGGTGGT GTCCATGGGGGATACTGTTACTTCACGGATTAGCTATTCTCATATTCACTAAAGGTTTCTTGCTTACTCGGACTGAGCTTCCTTACTTCAGCAGCTGCTC CGATGTTACCGAATCTCCTTGTTTCTCTATTCCTACTGCTTATTCCGATGGAAATGGTGATAATACTGTGAACGAGGATCAACATTGTTGGAGCAAACCT GCTGTGGACAAAATCGTCATTGTCATCCTTGACGCCCTTAGGTTTGATTTCCTTGCCCCAAGCGAGTTTTTTACAGAGAAAAAACCATGGATGGACAAGC TGCCTGTGTTACAAAATCTGGCATTCACTCAGAGGTCGTCCGCCAAGATTTTTAAGGCTATTGCAGATCCGCCTACTACTAGTCTCCAGCGTTTGAAGGG CTTGACCACTGGTGGACTGCCTACTTTTATTGATGTAGGGAATAGCTTTGGGGCTCCAGCCATTGTTGAAGACAATCTCATACATCAGCTGTCTAACTCC AGTTCAAATGTGCAGTTGGTGTCGAATGGAAAGCGAGTGATGATGATGGGTGATGACACATGGGTGCAGTTGTTTCCAGACCATTTCAACAGATCCTATC CTTATCCATCTTTTAATGTCAAGGATCTTGATACGGTCGACAATGGATGCATCACACACATATTTGAATCTTTATATCAAGAAGACTGGGATGTACTTGT TGCACATTTTCTCGGTGTGGATCATGCTGGTCATATATTTGGTGTTAATTCTGCGCAAATGGTAGAAAAATTGGAGCAATATAATAAGGTTCTGGAGGAA GTGATTGAAACGCTGAGCAGCAAATCTGGACCAGGAGGCTTACATGAGAATACTCTTCTGCTTGTTATGGGAGACCATGGTCAAACACTCAACGGTGATC ATGGAGGGGGGAGTGCTGAAGAGGTTGAGACATCTTTATTTGCAATGGGGTTTAAGCACCCTCCATCTTCTGTTCCTCGAGAATTCGATTCCTCCTCTTG TCTGTTAGATTCGGTATTCCTTTCTGTTCAGCTTGTTGTCGCTCTAGTTGCACAATTGGATGAGAAGAGGTGTGTGAGCTCCATTCAACAGCTTGATTTT GCAGCGACTGTCTCGGCATTAATTGGTGTCCCCTTTCCTTTTGGAAGCATTGGCTCTGTTAACGCCGAGCTTTATGCTTTGGCTACTGGTACTTGGAACT GGAAGGATCCTGACACTGCTAATGATCGACATCAGTCAAAGACTGTGGAATGGATGAAGAACTATGTTAATACACTTTGCATCAATTCTTGGCAGGTGAA AAGATACATTGATGTTTATTCAGCATCATCAATCATTGGATTTTCGTCCGAAGACTTGGTTCGCATATCAACCAAGTATGCTCAATTAGAGGAGAATTGG TCCCGTGCTATAAAAAAGCTATTCTCAACACAAACCGAGAACAATCCCTCATTACTACACCAGATTACCAAGCAAATTTCCGCTTATCTCGATTTCCTAT CACATGTCTCGGAGCTAGCTCACTCTAAATGGACCGAATTTAATATGACGATGATGGGTGTTGGGCTTGGGACGATGCTACTATCCCTGTTTATGATAAG TCTTGGTATACGGAGTATAAATAAGATCAGCTCGGGATTCAGCTTTGAGTCAGGATTGGCCTTTGCTATAGTGATGATACGAGCTTGCAGCTTCCTTTCG AATAGTTACATCTTGGGAGAAGGCAAAGTTGCGTGTTTTTTGCTGGCCACCACTGGCATTGCGAAACTACGTTGTTCACTGATCAGAAAAGAGATGCTAG TTGAAGCGATTATCTTCCTTCTATTGGTCTTGGGTCTCAGATTCTCCATTGAAATCGGGATGTCTAAACAGGCTGCCACGTCAGCGTTCATGCACGCTTC TAGTTCATGGATATCCGGGATTGCTCTCAGTGATTCATTATGGGCTTACGCTTCCGAACTCGGGCCGTTCTTAGCCATTGTTTGTATATCTGGCATAGTT TACGAAGCCGCAATCACAAATTCTCAAGGAGTCTCGAAATACATTCTCTTGTTGACGATTCCAAGTTATATGCTCATAGCAATGCTCTGGGCACTTGAGA GCAACATGCAGAGTCTGACGATGTTGTTTGAAGGCATTGGGAGAAACTACATCCCTCAAGCTGTTTATGCTATTGGGGCTTCCCAGCTGCTGTTTCTAGC ATTTGGTGCTCTATTCACAGAAGCCAAAAACACCATAGCTGTGGAAAAAAGTTTGGCGACGAAAGCAATTTGCATGCTGTCTGCATGGAGCCCGACGATC ATCATGTTGTCTGGAAAACAAGGTTCTTGGATTGCATTGGCGGCGATCATTGGAGGTTACTGCATAATGAGGTTAGCGTTAATCGGAAAGAACACAGATG TAGAGACGGCTGGAATTTCGAACTTCAATCCGCTTGCAGTGACGCAATGGAATCTTTTAGCTGTGTGTCTGTTTTTCGCCACTGGGCACTGGTGCGCTTT CGATGGCCTTCGCTATGGTGCTGCATTTGTCGGATTCGACGAGTTTATACTTGTCCGGCAAGCAATCCTTCTAACACTGGAAACATTTGGGTTCTCCCTC ATTCTTCCCGTTCTTGGCCTCCCGTTTCTTCTTCTGGGATGCCATCGGACGAACCACGGGAAGAACATTCTCTTCAATCAGCTTTCCCAGATGTATTTGG CTTATGGACTCATCACAGCAACCACAGTGACAGCCACCATACTGTGTGTTACTATCCAAAGGCGGCACCTCATGGTTTGGGGTCTATTCGCTCCAAAATT CGTTTTCGACGTTGTGGGTCTTATCCTAACTGAAGCCATGATTTGCTTGACTTCCCTCTTCTATTCGAAGTAA
AA sequence Show only first row Show all	>Lus10006806 pacid=23150760 polypeptide=Lus10006806 locus=Lus10006806.g ID=Lus10006806.BGIv1.0 annot-version=v1.0 MAFTSRLLFRSRQLYGTQVVFQHESAIPARYFSAKSDPQPKSLKGDDMLKNIFMEVKKKYETAVGVLRQEKIIIAPEDPAAVAQYVKVMKSVRQKADLLS ESQSIKNTIVEETKDIPDARSYLLKLQELRINQGLKDDLGAEAMMMDALEKIEKEVKKPLMRNDKKGMALLMAEFDKINQKLGIKREELPKYEEQLEVKM AKAQLEELKKDVHEAMETQKKRKLKMEARWIRWCPWGILLLHGLAILIFTKGFLLTRTELPYFSSCSDVTESPCFSIPTAYSDGNGDNTVNEDQHCWSKP AVDKIVIVILDALRFDFLAPSEFFTEKKPWMDKLPVLQNLAFTQRSSAKIFKAIADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAIVEDNLIHQLSNS SSNVQLVSNGKRVMMMGDDTWVQLFPDHFNRSYPYPSFNVKDLDTVDNGCITHIFESLYQEDWDVLVAHFLGVDHAGHIFGVNSAQMVEKLEQYNKVLEE VIETLSSKSGPGGLHENTLLLVMGDHGQTLNGDHGGGSAEEVETSLFAMGFKHPPSSVPREFDSSSCLLDSVFLSVQLVVALVAQLDEKRCVSSIQQLDF AATVSALIGVPFPFGSIGSVNAELYALATGTWNWKDPDTANDRHQSKTVEWMKNYVNTLCINSWQVKRYIDVYSASSIIGFSSEDLVRISTKYAQLEENW SRAIKKLFSTQTENNPSLLHQITKQISAYLDFLSHVSELAHSKWTEFNMTMMGVGLGTMLLSLFMISLGIRSINKISSGFSFESGLAFAIVMIRACSFLS NSYILGEGKVACFLLATTGIAKLRCSLIRKEMLVEAIIFLLLVLGLRFSIEIGMSKQAATSAFMHASSSWISGIALSDSLWAYASELGPFLAIVCISGIV YEAAITNSQGVSKYILLLTIPSYMLIAMLWALESNMQSLTMLFEGIGRNYIPQAVYAIGASQLLFLAFGALFTEAKNTIAVEKSLATKAICMLSAWSPTI IMLSGKQGSWIALAAIIGGYCIMRLALIGKNTDVETAGISNFNPLAVTQWNLLAVCLFFATGHWCAFDGLRYGAAFVGFDEFILVRQAILLTLETFGFSL ILPVLGLPFLLLGCHRTNHGKNILFNQLSQMYLAYGLITATTVTATILCVTIQRRHLMVWGLFAPKFVFDVVGLILTEAMICLTSLFYSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17250			Alkaline-phosphatase-like fami...		Lus10006806 [exp]	0	1
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	3.5	0.9032
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	4.5	0.9165
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	8.7	0.8909
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	9.7	0.8883
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	9.9	0.8789
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	10.4	0.8935
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	11.5	0.8801
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005102 [exp]	12.4	0.8696
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	13.2	0.8807
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10040374 [exp]	17.3	0.8767

Compare expression of checked genes

Lus10006806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.