Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10490 1321 / 0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1) AT3G57940 1295 / 0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1), Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005792 [exp] 1872 / 0 AT1G10490 1425 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079300 [exp] 1441 / 0 AT1G10490 1455 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1) Potri.005G085600 [exp] 1426 / 0 AT1G10490 1429 / 0.0 Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05127 [flax] [poplar] Helicase_RecD Helicase CL0023 [flax] [poplar] P-loop_NTPase PF08351 [flax] [poplar] DUF1726 Domain of unknown function (DUF1726)
Representative CDS sequence Show only first row Show all	>Lus10006807 pacid=23150773 polypeptide=Lus10006807 locus=Lus10006807.g ID=Lus10006807.BGIv1.0 annot-version=v1.0 ATGAGGAAGAAAGTGGACGAGAGAATCAGAACTCTGATCGAAAATGGCGTCAAATTGAGGCACCGCTCCATGTTCGTCATCGTCGGCGATAAGTATCGGG AGCAGGCACGGCTTAGTCGAATTTCTTATGAGCTTACCATTGTTAACCTTCATTACATGCTCAGCAAAGCAGTTGTGAAGTCAAGGCCGACTGTTCTATG GTGCTACAAGGATAAGCTCGATATCAGCAGTCATGCGAGAAAGCGAGCGAAGCAGATGAAGAAGTTTATGCAGAGAGGGCTGTTGGATCCTGAGAAGGCT GATCCATTCCAGCTATTTGCTGAAACTGGAGGGATAACTTATTGTTACTACAAGGACTCTGAAAGGATTCTTGGGAATACTTTTGGAATGTGCATATTGC AGGACTTTGAGGCTTTGACTCCGAATCTCTTGGCCAGGACAATCGAAACAGTTGAAGGTGGCGGACTTATCATACTGCTTCTCCGGTCTCTCACCTCCTT GACCAGTTTGTACACCATGGTTATGGATGTGCATGATAGGTTTCGGACTGAATCCCATTCCCAGGCTACTGGGCGGTTCAATGAGCGGTTTTTGTTGTCA GTTGCCTCATGCAAAGCATGTGTTGTTATGGATGATGAGCTGAATGTCTTGCCGATATCCTCTCATATAAGGTCGACTACTCCTGTTCCAGTTAAAGAGG ACTCGGAAGGTCTTTCAGAGGCAGAGCGACAGTTGAAAGATTTAAAAGAAGAGCTACATGATAGTTATCCCGCTGGCTCTTTGGTTAAGAAGTGTTGTAC ACTTGACCAGGGAAACGCAGTTGTGCAATTTTTGGATGCAATATTGGAGAAGACCTTACGTAGCACAGTGGCTCTACTTGCTGCTCGTGGACGTGGGAAG TCAGCTGCACTTGGTTTGGCAGTAGCAGGGGCAGTTGCAGCCGGGTACTCCAATATATTTGTAACAGCACCAAGCCCGGAAAATCTTAGAACATTGTTTG AGTTCATATGCAAGGGCTTTGATGCCCTTGATTACAAGGAACACATAGATTATGATGTTGTTCAAAGTTCGAACTCTGAGTTCAAGAAGGCAATTGTTCG GATAAATATCTACAAGCAACACAGACAAACAATTCAGTATATACAACCTCATGAATCTGCAAAGTTGTCCCAAGTGGAATTACTCATCATAGATGAGGCT GCTGCCATCCCGTTGCCGGTTGTGAAGGCATTGCTGGGCCCTTATTTGGTCTTTCTCTCATCTACCGTGAATGGGTACGAAGGAACTGGCCGGTCGTTGT CATTGAAGCTGCTGGATCAGTTACAGAAACAAAGTCAGTTACGTACTAATAATACAGAGGGCTCAATTTCTGGCCGTCTTTTCAAGAAAATTGAGCTGAA TGAGTCCATCAGATACGCCATTGGTGACCCAATAGAATCCTGGCTTAACAGATTACTGTGTCTGGATACTTCAAACTTCATTCCTAACATCACTAGGTTA CCCCCACCAGAAGAATGTGATCTCTTTTATGTCAACCGTGATACCCTTTTCTCATGTCACAAAGGTACCGAAGAGTTTTTGCAGAGAATGATGGCGTTGT ACGTTTCATCACATTATAAAAACTCTCCTAATGACTTACAGTTGATGGCTGATGCTCCTGCACACCATTTATTCGTATTGACTGCCCCACCTGATGAGTC TACAGAAGAACTTCCTGATATTCTTTGTGTTATTCAGGTCAGTCTTGAGGGCAAGATTTCTCGTAAATCTACAGTGAAAAGCTTAAGTGAAGGGCATCAA CCATATGGGGACCAAATCCCATGGAAGTTCTCTGAGCAGTTCAGGGATACCACATTTCCTACACTCTCTGGAGCTCGTATTGTACGGATTGCCACCCATC CGCATGCCATGAAGCTTGGATATGGATCTGCTGCTGTTAAACTCTTAACAAGGTATTATAGTGGAGAGCTGGCTGGTTTTTCTGAACTAGATCTAGATGG CGATTTGGAGGAGACTCCACAAGTTCGAATTACAGAAGCTGCAGAGAAGGCTTCACTGCTTGAAGAGAGTATAAAACCTAGAGCAAACCTGCCGCCTCTA TTAGAACATCTACGCGATCGAAGAGCTGAGAAGCTCCACTACCTAGGTGTCTCCTTTGGGCTTACTTTGGATCTCCTTCGCTTTTGGAGGAAACATAAGT TTGCTCCCTTCTACATTGGCCAAATTCCAGTTGAGTTCGCTAAACTTTTGAGTGCTATTACCGGTGAGCATACATGCATGCTCATCAAACCGTTGCACAA CGATGATGTCGAAGCCAACGAGTCGGATGAGTTGGGCTTCTTTGCTCCTTTCTACCAAGATTTCAGGCTAAGGTTTCTAAGACTGCTTAGTTCCAGCTTC AGATCAATGGACTACAAGCTTGCAATGAGTGTTCTTGATCCCAAAATCAACTTCACTGACACCGAGCCAAATAAAAAACAATCCGTCCCAGATGGGTTTT CGAAATCGCTGTCTGATGAACTGTCACCGTATGACATGGAACGCCTTAGGGCTTATACCGACAGTCTAGCTGATTTTCATTTGATCCTCGACATTGTTCC GATTCTTGCTCGCCTCTACTTCCGCGGAAGGCTCCCAGTGACATTGTCGTCTGTTCAGGCATCTGTATTACTCTGCATCGGCTTGCAGCAACAAAATGTC ACGCACATCGAGCAACAAATCGAACTAGAAAGGACTCAGATTCTGTCACTGTTTATAAAACTCATGAAGAAGTTTTATAAATACCTCCACGGTGTTGCAT CCGACGAGATCCAATCGACCCTGCCCCGATTAAAAGAGAGAGTGCTGGAGCCTCTCAGCATTTCGGTGGAGGACGATCTCAATGAAGCAGCAAAGCAAGT AAAGGATAAGATGAAGAACAAGGCGGTCGAGGACAAGGAAGAGAACAAGAAGAACAAGGACAAGAATCCAGCACTCCTCCAGCGATACGAAATCGAAGGG AGAGATGAAGATTTCGAGGAAGCCTTACAGAACGGTGGTGTTAAGCTGACCTCGGGCGCGGTCGTGACCTTGAAATCAAAGGGTGAGAAATCTGGGAAGA AGAGAAGTAAAGAAGATGAGAAGAAGGGATCGAAGTCCAGTGGTAAAAAGAGAAGATCATAG
AA sequence Show only first row Show all	>Lus10006807 pacid=23150773 polypeptide=Lus10006807 locus=Lus10006807.g ID=Lus10006807.BGIv1.0 annot-version=v1.0 MRKKVDERIRTLIENGVKLRHRSMFVIVGDKYREQARLSRISYELTIVNLHYMLSKAVVKSRPTVLWCYKDKLDISSHARKRAKQMKKFMQRGLLDPEKA DPFQLFAETGGITYCYYKDSERILGNTFGMCILQDFEALTPNLLARTIETVEGGGLIILLLRSLTSLTSLYTMVMDVHDRFRTESHSQATGRFNERFLLS VASCKACVVMDDELNVLPISSHIRSTTPVPVKEDSEGLSEAERQLKDLKEELHDSYPAGSLVKKCCTLDQGNAVVQFLDAILEKTLRSTVALLAARGRGK SAALGLAVAGAVAAGYSNIFVTAPSPENLRTLFEFICKGFDALDYKEHIDYDVVQSSNSEFKKAIVRINIYKQHRQTIQYIQPHESAKLSQVELLIIDEA AAIPLPVVKALLGPYLVFLSSTVNGYEGTGRSLSLKLLDQLQKQSQLRTNNTEGSISGRLFKKIELNESIRYAIGDPIESWLNRLLCLDTSNFIPNITRL PPPEECDLFYVNRDTLFSCHKGTEEFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLTAPPDESTEELPDILCVIQVSLEGKISRKSTVKSLSEGHQ PYGDQIPWKFSEQFRDTTFPTLSGARIVRIATHPHAMKLGYGSAAVKLLTRYYSGELAGFSELDLDGDLEETPQVRITEAAEKASLLEESIKPRANLPPL LEHLRDRRAEKLHYLGVSFGLTLDLLRFWRKHKFAPFYIGQIPVEFAKLLSAITGEHTCMLIKPLHNDDVEANESDELGFFAPFYQDFRLRFLRLLSSSF RSMDYKLAMSVLDPKINFTDTEPNKKQSVPDGFSKSLSDELSPYDMERLRAYTDSLADFHLILDIVPILARLYFRGRLPVTLSSVQASVLLCIGLQQQNV THIEQQIELERTQILSLFIKLMKKFYKYLHGVASDEIQSTLPRLKERVLEPLSISVEDDLNEAAKQVKDKMKNKAVEDKEENKKNKDKNPALLQRYEIEG RDEDFEEALQNGGVKLTSGAVVTLKSKGEKSGKKRSKEDEKKGSKSSGKKRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	0	1
AT1G63810			unknown protein		Lus10026014 [exp]	1.4	0.9719
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	2.0	0.9666
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	2.4	0.9656
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	2.8	0.9610
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	3.5	0.9579
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	4.0	0.9525
AT1G69070			unknown protein		Lus10019174 [exp]	4.5	0.9592
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	5.5	0.9416
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	5.7	0.9413
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	7.0	0.9532

Compare expression of checked genes

Lus10006807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.