Plant FIBer expression Database

Lus10006808 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005791
[exp]
308 / 4e-104 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G114100
[exp]
233 / 4e-75 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11805 DUF3326 Protein of unknown function (DUF3326)
Representative CDS sequence
>Lus10006808 pacid=23150759 polypeptide=Lus10006808 locus=Lus10006808.g ID=Lus10006808.BGIv1.0 annot-version=v1.0
ATGGACTGGTTGGACCGTGAATTGGGTATTGGCGGGAAAGCAAAAGATTTTCCGCATTTCTCGCTGGTCTTATCGGATAATGGTGGCGGCACTTCTCCAC
CATTGCCGGCCACTCATCCCCCGCCGGCGGACTCCTCGCAGCCGTCAATCCGAATCAGAACTCCCCGAGCTGCTTCTTTCCGATGCTCGAGCAAGGTCAG
TCGCGCTTTAGGTAGCATGGATTACACGAGCGTGATGATAGTCCCTACTGGTGTCGGAGCTTCAATCGGCGGATTCGCCGGCGACGCACTGCCTGTTGCT
CGCGCCTTGGCTTCCGTCGTCGACTGCCTCATAACTCACCCCAATGTTCGTTTCCTTTCTCCAATCATTATACCATTTGCAGAAGGGAAATGGGGGCTTG
AGCCTGTTCATCAAAATAGGGTGGGGTTAGTGCTTGATTGTGGGATGGAGGAAGAACTCAGAATCCGCCATTTACAAGTGGCTGATGCTGCCAGGGCTTC
TCTTGGGTTGCCTGTTGTGGAGTACACTTTCATTGACACGCCATTAGAGGCACCATTGGTGGAGAAGTGGGTTGACCCAATCAGTGGTCAGTCAACAGGA
AGAATAAGGCACCCTGATTCTTTACTGAGAGCTGTACGGATGTTGATTAATGAGTCTGAAGTAAATGCTGTTGCTGTTGTGGCTCGGTTTCCTGACGATG
ATGGTGACGAAGTTGATGAGTAA
AA sequence
>Lus10006808 pacid=23150759 polypeptide=Lus10006808 locus=Lus10006808.g ID=Lus10006808.BGIv1.0 annot-version=v1.0
MDWLDRELGIGGKAKDFPHFSLVLSDNGGGTSPPLPATHPPPADSSQPSIRIRTPRAASFRCSSKVSRALGSMDYTSVMIVPTGVGASIGGFAGDALPVA
RALASVVDCLITHPNVRFLSPIIIPFAEGKWGLEPVHQNRVGLVLDCGMEEELRIRHLQVADAARASLGLPVVEYTFIDTPLEAPLVEKWVDPISGQSTG
RIRHPDSLLRAVRMLINESEVNAVAVVARFPDDDGDEVDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10006808
[exp]
0 1
AT1G80080 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like... Lus10042458
[exp]
1.4 0.9402
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Lus10002587
[exp]
2.0 0.9341
AT1G55800 Domain of unknown function (DU... Lus10016346
[exp]
3.5 0.8948
AT3G10080 RmlC-like cupins superfamily p... Lus10020631
[exp]
3.5 0.8967
AT5G53210 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-h... Lus10039328
[exp]
5.5 0.8900
AT5G60880 BASL breaking of asymmetry in the s... Lus10034654
[exp]
6.5 0.8706
AT4G01030 pentatricopeptide (PPR) repeat... Lus10017350
[exp]
6.7 0.8524
AT2G25737 Sulfite exporter TauE/SafE fam... Lus10014316
[exp]
7.3 0.8888
AT1G36390 Co-chaperone GrpE family prote... Lus10042696
[exp]
7.7 0.8312
AT1G17630 Pentatricopeptide repeat (PPR-... Lus10002512
[exp]
8.1 0.8153

Lus10006808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.