Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005791 [exp] 197 / 6e-62 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114100 [exp] 140 / 2e-40 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11805 [flax] [poplar] DUF3326 Protein of unknown function (DUF3326)
Representative CDS sequence Show only first row Show all	>Lus10006809 pacid=23150747 polypeptide=Lus10006809 locus=Lus10006809.g ID=Lus10006809.BGIv1.0 annot-version=v1.0 ATGTTGTTTACAACAGTTAGGCTACACATTCTTACCTTGTGTGCTTGTGGGACTGGCAAAGCACCTCAGTTCAAAGTCAACTCTCAGTCATCGGAATCCG ATTGTATATATGCCAGCGCAGTTGTTCCCCTGGATGCCTGCGGAGGAGATGCTGCCCTTGCTTTTGCTAGAAGTAAAGGAAAAAAGCCACTAATTGTTGC TGTGGAGGAAAATGGGACGGTCCTCGACAGTGCACCAGATAAACTCGGGATTGAAGTGAATTTTCAGATCAAGGTGTCGAACTACTGGGAAGCAACAGGC GTTATAGCCGCTCACAAGGCTGGAATCAACCCACATTCTCTAAGACGAGACAGAATCTCAAACACCCATCACCGCAAGAACAGTTCAATTATAGGCAGAC CAATGGTTTCACAGCTTCCATCCCACATTCATAGGGACAATGAACGAGTTCAAGTGATGCGTGCCACAGTTCTTTCTTCGATCTACAACTTCCCCTACGA GGTAGAGAGACACGCAGAAATGATCCCGTTCTAA
AA sequence Show only first row Show all	>Lus10006809 pacid=23150747 polypeptide=Lus10006809 locus=Lus10006809.g ID=Lus10006809.BGIv1.0 annot-version=v1.0 MLFTTVRLHILTLCACGTGKAPQFKVNSQSSESDCIYASAVVPLDACGGDAALAFARSKGKKPLIVAVEENGTVLDSAPDKLGIEVNFQIKVSNYWEATG VIAAHKAGINPHSLRRDRISNTHHRKNSSIIGRPMVSQLPSHIHRDNERVQVMRATVLSSIYNFPYEVERHAEMIPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006809 [exp]	0	1
AT1G10522			unknown protein		Lus10030655 [exp]	3.9	0.9156
AT1G55140			Ribonuclease III family protei...		Lus10037645 [exp]	6.2	0.9117
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	13.1	0.9017
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	13.6	0.8987
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10011493 [exp]	17.0	0.8864
AT5G38360			alpha/beta-Hydrolases superfam...		Lus10009166 [exp]	17.6	0.8981
					Lus10028110 [exp]	19.0	0.8494
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	19.2	0.8951
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	20.9	0.8275
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10042293 [exp]	23.6	0.8799

Compare expression of checked genes

Lus10006809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.