Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64790 565 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 496 / 9e-173 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 494 / 3e-172 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 490 / 2e-170 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 480 / 2e-166 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 462 / 1e-159 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 448 / 5e-154 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 444 / 2e-152 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 438 / 5e-150 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 363 / 8e-121 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005788 [exp] 1000 / 0 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 503 / 2e-175 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 498 / 2e-173 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 491 / 7e-171 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10028104 [exp] 461 / 1e-159 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 460 / 6e-159 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 451 / 5e-155 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 447 / 1e-153 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 446 / 5e-153 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G078900 [exp] 594 / 0 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 508 / 2e-177 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.019G032900 [exp] 499 / 3e-174 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G280700 [exp] 472 / 4e-163 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 470 / 2e-162 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 457 / 1e-157 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 455 / 1e-156 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 452 / 1e-155 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 442 / 1e-151 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 380 / 1e-127 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10006811 pacid=23150740 polypeptide=Lus10006811 locus=Lus10006811.g ID=Lus10006811.BGIv1.0 annot-version=v1.0 ATGATCAGATCCACACGATCTCCTCTGCTCGTAGCAGGGGACTATCGTCGTGACAGGATATGTCTATGGGCAACATGTTTGTTGATCATCACGATAACAA ATGTTGCCCCGGTGTTCTCGGCAACCAATTCATCGTTGTCGGTTGTGCAGGGGGTCGGGGTGAATTGGGGGAGCATCACGTCGCACCCCATGTCACCAGA CATCGTGGTACAGATGTTGAAAGACAACGGGTTCAAAAAGTTGAAGCTTTTCGAGTCGGATTCGTACACGGTTAGCAAATTTGCCGGCACCGACATCGAG GTGATGCTCGGGATCCCGAATAACCAACTCCATGACCTGGCCAAGGATTATGACAATGCCAAGGATTGGGTGAAGGAGAATGTCTCGGATCACATGTCTA ATGAGAAAGATAAGCACGTCAATATAAAGTATGTGGCGGTAGGAAATGAGCCCTTTCTAATAAGCTACGCTGACAAGTACATAAAGGACTTATTCCCCGC GATGCAGAACATTCAAAAGGCTCTTAACGAAGCCGGGTACGGCAACACAATCAAAGCTACCGTGCCGTTGAATGCTGACGTGTACGAGTCGAACTCGAAC AAGCCGTCGGACGGAAACTTCCGGAGCAACGTGAAGGACCAAATGAAGGCAATAATCAAGTTCCTCAGCCAGAACAAGGCCCCCATCGTGGTCAACATCT ACCCCTTCCTCAGCCTCTACCAGTCCTCCAACTTCCCGTCATCGTTCGCTTTTTTCGACGAGAATGGGAGGAAAGTTTACGACAAGAACGTCGCGTACTC AAACGTGTTCGACGCGAATTACGACACGCTCGTGTACGCCTTGAAAAAGAATGGGTACCCCGACATTAAAATTATTGTCGGGGAGGTTGGGTGGCCTACC GCGGGCCACAAATACGCTACGCCCGAGTATGCTGAGAAGTTTTACTCGGGCCTGATGAAAAAGCTTGCAGGAAATAAAGGGACCCCGCTCCGTCCCGGGA AACTAGATGTCTATCTGTTTGCACTAATGGATGAAGACCAGAAAAGTATCGAGCCGGGCCCATTCGAACGACATTGGGGCTTGTTTGCGTTCGACGGGAA ACCTAAATTTCCCGTTGATTTATCCGGAAAGGGCAACGACAAGATGCTGGTCGCGGCCAAAGGGGTTCAGTACCTGCCAGCGCAGTGGTGCATACTGAAC CCGGACGCGTCGAACCCTGTGGGGCTCGATGACGCGTTGGGGTATGCTTGCGCATACGGAGACTGCACGAGCTTGAAACCGGGGTCTCCCTGCGCCGACA TGTCGAAGAGCGGGCAAGCGTCCTACGCGTTCAACATGTACTACCAGATCAACGACCAGGACGTGGATGCCTGCGATTTCAACGGGCTGGCCGCACTAGT GAAGACCAATGCGTCCCGTGGGAACTGTCTATTCCCGGTCCAGATCGTGAGCGGCGGATTTTTGATCGAAAGTGGTGGTGGTGTTGGATTGGTAGCAAGC ATCTTAGTGCTAATGGGGTTGTCAATGTTATAA
AA sequence Show only first row Show all	>Lus10006811 pacid=23150740 polypeptide=Lus10006811 locus=Lus10006811.g ID=Lus10006811.BGIv1.0 annot-version=v1.0 MIRSTRSPLLVAGDYRRDRICLWATCLLIITITNVAPVFSATNSSLSVVQGVGVNWGSITSHPMSPDIVVQMLKDNGFKKLKLFESDSYTVSKFAGTDIE VMLGIPNNQLHDLAKDYDNAKDWVKENVSDHMSNEKDKHVNIKYVAVGNEPFLISYADKYIKDLFPAMQNIQKALNEAGYGNTIKATVPLNADVYESNSN KPSDGNFRSNVKDQMKAIIKFLSQNKAPIVVNIYPFLSLYQSSNFPSSFAFFDENGRKVYDKNVAYSNVFDANYDTLVYALKKNGYPDIKIIVGEVGWPT AGHKYATPEYAEKFYSGLMKKLAGNKGTPLRPGKLDVYLFALMDEDQKSIEPGPFERHWGLFAFDGKPKFPVDLSGKGNDKMLVAAKGVQYLPAQWCILN PDASNPVGLDDALGYACAYGDCTSLKPGSPCADMSKSGQASYAFNMYYQINDQDVDACDFNGLAALVKTNASRGNCLFPVQIVSGGFLIESGGGVGLVAS ILVLMGLSML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10006811 [exp]	0	1
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10020687 [exp]	8.8	0.8877
					Lus10011061 [exp]	14.0	0.8815
					Lus10009800 [exp]	17.1	0.8815
					Lus10011496 [exp]	19.8	0.8815
					Lus10011759 [exp]	22.1	0.8815
					Lus10011848 [exp]	24.2	0.8815
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	26.2	0.8815
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	28.0	0.8815
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	29.7	0.8815
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	31.3	0.8815

Compare expression of checked genes

Lus10006811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.