Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39460 440 / 7e-156 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G34065 402 / 2e-140 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 143 / 9e-38 Mitochondrial substrate carrier family protein (.1) AT1G74240 128 / 6e-34 Mitochondrial substrate carrier family protein (.1) AT5G42130 126 / 1e-32 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT2G26360 114 / 1e-28 Mitochondrial substrate carrier family protein (.1) AT2G35800 113 / 3e-27 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT2G30160 94 / 2e-21 Mitochondrial substrate carrier family protein (.1) AT1G07030 93 / 4e-21 Mitochondrial substrate carrier family protein (.1) AT1G79900 91 / 1e-20 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005787 [exp] 597 / 0 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10029770 [exp] 126 / 8e-33 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 118 / 5e-29 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 118 / 6e-29 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 110 / 4e-27 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 107 / 4e-26 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 105 / 9e-26 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 91 / 2e-20 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10035134 [exp] 88 / 2e-19 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085900 [exp] 462 / 9e-165 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 396 / 1e-138 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 147 / 2e-39 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 124 / 3e-32 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.008G043700 [exp] 124 / 5e-31 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 121 / 5e-30 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 117 / 5e-30 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 110 / 2e-27 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 104 / 2e-25 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 101 / 3e-24 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10006812 pacid=23150763 polypeptide=Lus10006812 locus=Lus10006812.g ID=Lus10006812.BGIv1.0 annot-version=v1.0 ATGGCTCCACTCACAGTAGCTGTGGATACGCCGAAGGCCGCTTCACCAATGGCGACAGCTCCCTCTGGCAGCGGGAAAATGCAGCTCACTCAGATCGAAA GCAGGAAGCCATTCGCCTCGCTCAGCGCTCATGGAGAAGATAAACCGTTTGATTTCCTGCGGACTGTGTTCGAAGGAGTAATAGCAGGCGGTGCAGCTGG CGTTGTTGTGGAAACAGCCTTGTATCCTATCGATACTATCAAGACAAGGTTGCAGGCAGCCTTGTTGATTCATGTGGTTTTAGATGCTTTACTGCTTGTG ATTTTGTTATCTGGAGCTCTTGCAGCTCGTGGTGGTGGGAAGATTGTTTTTAAAGGCCTTTACTCTGGCTTGGCTGGAAACATTGCTGGTGTCCTACCGG CTTCCGCTTTGTTCGTTGGAGTATATGAACCTGCGAAGCAGAAGTTGTTGCAAGTTTTTCCTGAAAACTTTAGTGCTTTTGCTCATCTAACTGCAGGAGC CATAGGTGGCCTTGCTGCTTCTTTTGTTCGTGTACCGACCGAGGTTGTTAAACAAAGAATGCAAACTGGACAATTCTCATCTGCCCCCAACGCCGTTCGC CTCATCGTTGCCAAAGAAGGTTTCAAGGGTCTCTATGCAGGATTTGGAGCATTCTTACTCCGAGATCTTCCGTTTGACGCCCTTCAGTTTTGCATCTACG AGCAGATCAGAATCGGTTACAAAGCTGCAGCATGGAGAGATCTCAACGATGCCGAGAACGCAGTCATTGGCGCATTCGCAGGTGCTCTAACCGGAGCTGT GACTACCCCACTCGACGTGATTAAAACTAGACAAATGGTTCAGGGATCAGGAAACCAGTACAAAGGAGTGGTGGACTGTGTTCAAACTATTGTTAGGGAA GAAGGCCCTTCTGCTCTTCTCAAGGGTTTGGGGCCAAGGGTGCTGTGGATAGGAATAGGGGGTTCGATCTTTTTTGGAGTGTTGGAGAGCACAAAGAGGA TGCTTGCAGAGAGGCGACCACCACCTCCGACTCAGCTTTCGAACTCGAGTAAGCACGATTAG
AA sequence Show only first row Show all	>Lus10006812 pacid=23150763 polypeptide=Lus10006812 locus=Lus10006812.g ID=Lus10006812.BGIv1.0 annot-version=v1.0 MAPLTVAVDTPKAASPMATAPSGSGKMQLTQIESRKPFASLSAHGEDKPFDFLRTVFEGVIAGGAAGVVVETALYPIDTIKTRLQAALLIHVVLDALLLV ILLSGALAARGGGKIVFKGLYSGLAGNIAGVLPASALFVGVYEPAKQKLLQVFPENFSAFAHLTAGAIGGLAASFVRVPTEVVKQRMQTGQFSSAPNAVR LIVAKEGFKGLYAGFGAFLLRDLPFDALQFCIYEQIRIGYKAAAWRDLNDAENAVIGAFAGALTGAVTTPLDVIKTRQMVQGSGNQYKGVVDCVQTIVRE EGPSALLKGLGPRVLWIGIGGSIFFGVLESTKRMLAERRPPPPTQLSNSSKHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	0	1
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	2.8	0.9139
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	4.5	0.9133
AT2G44640			unknown protein		Lus10043347 [exp]	5.2	0.9054
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	5.3	0.9029
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	6.0	0.8908
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10034171 [exp]	7.7	0.8893
AT5G08540			unknown protein		Lus10017363 [exp]	12.0	0.8944
AT5G03420			5'-AMP-activated protein kinas...		Lus10023003 [exp]	12.4	0.8951
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	13.0	0.9005
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	13.4	0.8958

Compare expression of checked genes

Lus10006812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.