Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39420 1610 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005786 [exp] 2349 / 0 AT4G39420 3258 / 0.0 unknown protein Lus10030711 [exp] 581 / 0 AT4G39420 436 / 7e-140 unknown protein Lus10008760 [exp] 197 / 8e-58 AT4G39420 142 / 1e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086100 [exp] 1856 / 0 AT4G39420 3493 / 0.0 unknown protein Potri.007G078650 [exp] 1798 / 0 AT4G39420 3458 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006813 pacid=23150744 polypeptide=Lus10006813 locus=Lus10006813.g ID=Lus10006813.BGIv1.0 annot-version=v1.0 ATGGCCCTAGATAATAATCCTCTTTCTTCAATACCAGAAGCGGCTGGAGATTGTCAGTGGGCAAAATGGTTGATTTTATCAAGAATAAAAGGCCGCGAGT ATGATTCATCATTTTGTAATGCTCGGACGGTACTGTCTCGTACCTTGAGTTCGGACGGCAACCCAATGGAAATTAATGAAATAGTTCGTACCGTCGATGA CATTGCTGAAGGAGGCGGTGAGATGGCAGTACCGTGGATGACATTGCTGAAGGAGGCGGGTCCACTCGGTTGGCAGTCACTTTTGGGTATGCCTCCTGGA GACTCCCTGTATCATAGAGACATCGACTTCTACATTCTCGAAGAAGAGCATACTGATATAAGTCCAGTTGCGTGGGAAGCAACAGTACAGAAGCATGTTC AAGAGGAACTGTACGGTTCTTTGCTCGAGGAGACCGGGCTAGGTCTTGAGCATCATTTACTTCGTGGACGTGCGTTGGCAGCTTTCAACCATATACTTGG TGTTAGACTTCAGAAGTTGAAAAAGGAAGGAGACTCCGAAGGTTCACCACATTGGCAAAACAATGTTCAATCGGATGTGCAAATGCTTCTTTCACCTTTA GTACCAAGTGAAGAATCTCTTCTTTCATCTGCCTCCAAGGAGTTTAGTAATGCTCGTCTCAAAATTCACGTACTAACAGTCTTAAAGAGCATGCAGTCCA AAAAGAAGATCGGTTCTCCTTCTTCTTCTGATACCGCAGAAAGAAGTTTGCCCTGTTCAGATGATAATGTACTTATCCCTGTTGAATTATTCAGTGTGTT AGCAGACTGCGAGCAGCAGAATAGCCCTGGGGTTGCCTTGTTGCGGAAAGCAAAGGAAATGTCTTGGTCAACCTTAGCAATGGTTGCATCATGCTTCTCC GAAGTCTCACCATTAACCTGTCTTACAGTTTGGCTTGAAATTACAGCTGCAAGGGAAACTTCATCCATCAAGGTGAACAACGTTACCACCCAGATTGCAG ATAATGTTTTAGCGGCTGTGGAGGCTACTAATTCCTTGCCTACTGGCACTGCATCCCCAACATGCCATTATAACCGGCAAAATCCAAAACGGAGGCGGAT TATGGAACCTATATCTGAGAATAAGTCACTTGAAACCTCTAGAGTTTCAAGTATTTCTAGTAGCACAGAAAAATATATTTCTGAAGATGCAATTGCTGAG GAGATTAAAGCGGAATTTGCTGAAAGGCATACTGTTTCTGGTGATTCTGATGAGGGCCAAGTATCCCTTTCCAAGATGGTGGCTGTTCTGTGCGAGCAGA AATTATTCCTACCTTTGTTAAGAGCCTTCGAGATGTTCCTTCCTTCTTGTTCTTTACTACCTTTTCTCAGAGCACTTCAGGCATTTTCACAAATGCGCCT ATCTGAGGCTTCAGCACATCTGGGTTCATTTTCTGCTAGGATAAGGGATGAAGCATCTAGCTCTCAAACAAATGTTGGTAGAGAGGCATCAGTTGGCGTA CAATGGATAAGTTCGACTGCTGTAAGAGCTGCTGATGCCATGCTTTCAACGTGTCCCTCTGCTTATGAGAAGAGGTGCCTACTACAGTTGCTTGCAGCGA CTGAGTTTGGTGATGGAGGTTCTGCAGCAACATATTATCGGCAACTTTATTGGAAGATTAATTTAGCAGAGCCTTCATTGCGCAAGGGCGACAATGTAAA TCTTGGAGATGAGTCTCTAGATGATGCTTCACTTCTAGAGGCTCTGGAAAAGAATGGATATTGGGAGCAGGCACGTAACTGGGCAAGGCAGTTAGGGGCC AGTGGAGGAACTTGGAAATCAGCTGTTCATCATGTCACTGAAACTCAGGCTGAATCAATGGTGGCTGAGTGGAAGGAGTTTCTTTGGGATGTCCCAGAAG AGAGAGTTGCTTTGTGGGGTCACTGTCAAACGCTGTTCATCAGATATTCATTCCCTCCTCTGCAAGCCGGCTTGTTTTTCCTGAAGCACGCTGAAGCAGT GGAGAAAGACCTTCCTGCAAAAGAGCTCCATGAACTTCTGCTTCTTTCTCTTCAATGGTTAAGTGGGATGATAACCTTGTCTCAGCCAGTGTATCCGTTG CATCTTCTTCGCGAAATCGAGACTAGAGTGTGGCTACTAGCGGTCGAATCCGAGGCTCAGATAAAATGCGACGGGGACTTCGTTTCAACTTCTTCAACCC GAGATCCTGTGGCTGGACATCCCTCCAACATGATTGACAAGACAGCAAGCTTGGTGGGCAAGATGGACAGACATATCAATTCCATGAAGAGTAAGTCCGT AGAAATACACGAATCCAGAGAAAATAACTTGCTACATCACAAGAACCAGGTAGCTGATGCCGGTACCTCGAAAACGAAACGGAGAACCAAAGGTCATTTC CAGCCGAGGAAACCATATGCCGACCCGATGGATAAGGCGGGCGCTGATTCCGACGAGATTTTCGCTTCCCACGCTTTTAGAAATGACTTGCAGTTCTTGG ACGAAAGTGCGAAATTGGAGGTGTCTTTTTCCAAGTGGGAGGAAAGGATCGAAACTGCAGAAATGGAAAGGGCGGTTCTTTCGTTGTTGGAATTTGGACA AATTACTGCTGCCAAACAACTTCAACATAAACTTTCGCCTTCGGACACGCCTTCCGAGTTCATAATTGTGGACGCTGCTCTGACTATCGCAGCTATCTCT ACACCTTGGAGTAAAGTATCAGTCTCTATGATTAACGAGGATGTTCGAGCTGTTCTTCAATCGTATAACATATGCACAGAGGAGAATATCATTGATCCAC TAGAGGTCTTGGAAAGCTTAGTTGCCATCTTCACAGAGAGCAGGGGACGTGGACTGTGTAAGAGAATTATAGCGGTGGTGAAAGCTGCGAATGTACTCGG TCTCAGCTTCTCAGAGGCATTCGACAAACAGCCCTTTGAACTTCTCCAGCTCCTCTCTCTGAAAGCACAGGAGTCCTTCGAAGAAGCTCTACTCTTGGTG CAAACTCACACCATTGCAGCTAGTAGCATCGCGCAAATCCTAGCAGAATCCTTTCTCAAGGGACTACTTGCTGCGCATCGTGGCGGGTATATGGACTCCC AGAAAGATGAAGGACCTGCACCTCTACTATGGAGATTCTCCGACTTCTTAAAGTGGGCTCAGCTTTGCCCTTCTGAACCAGAAATCGGCCATGCCTTGAT GCGCTTGGTCATCACCGGACAAGAAATACCACATGCCTGTGAGGTTGAGCTACTGATTCTATCTCACCATTTCTACAAATCGTCGGCATGCCTGGACGGA GTCGACGTCCTGGTAGCACTCGCTGCGACCAGAGTGGACGCATATGTCTCCGAAGGGGATTACTCTTGCCTTGCCCGTCTGTTGACTGGCGTTGGAAACT TCCAAGCGCTGTACTTCGTCCTCGGCATTCTCATAGAGAACGGGCAGCTCGATCTCCTTCTCCAGAAGTTCACCGCCGCTGCAGATTCCGACACCGAGAC AGCTGTCACCGTCGAAGGATTCCGGATGGCTGTGCTCACCGCTTTGAAGCATTTCAACCCCCAGGATCTTGACGCTTTCGATATGGGCTACAACCACTTC AACATGAAGCACGACATAGGAGCACTCCTAGAATCCCGCGCAAAAGCATGCTCCGAACAATGGTTCCGCCGCTACTACAAGGATCAGAACGAGGAGCTCC TCGAAGCGATGCGGTACTCCATCGAAGCAGCTGAGGTCTACTTCTCCATGGACGCCGGCAACAAAACCCGCCGAGCATGCTCCGAAGCCTCCTTGGTCTC CCTCCAAATCCGAATGCCCGACACCAAGTGGCTCAGCCTCTCCGAAACCAACGCGAGGCGAATCCTCGTCGAGCAGTCTCAGTTCCAAGAGGCTCTCATT GTGGCCGAAGCGTATGGACTCAACCAGCCGGGCGAGTGGGTTTTGGTTCTTTGGAACCAGATGCTTAAACCCGAACTAACAGAAGCGTTTGTGGCCGAGT TCGTCGCTGTCGTTCCATTACAGCCTTCCACGCTGATTGAGCTGGCGAGGTTTTACCGTGCTGAGGTGGCGGCGAGGGGTGATCAGTCGCAGTTTTCGGT TTGGTTGACGGGTGGCGGAATGCCGGCTGAGTGGGCTAAGTATTTGGGTAGATCTTTCAGGTGCTTGTTGAAGGTTACTTGGGACTTAAGGCTAAGGCTG CAGCTTGCGAATATTGCTACGGGTTTCGGTGATGTTGTCGATTCGTGTATGAAGGCGCTCGATAAGGTTCCCGACAATGGCGGCCCGCTTGTTCTGAGGA AAGGTCACGGCGGTGGATACCTGCCGTTGATGTGA
AA sequence Show only first row Show all	>Lus10006813 pacid=23150744 polypeptide=Lus10006813 locus=Lus10006813.g ID=Lus10006813.BGIv1.0 annot-version=v1.0 MALDNNPLSSIPEAAGDCQWAKWLILSRIKGREYDSSFCNARTVLSRTLSSDGNPMEINEIVRTVDDIAEGGGEMAVPWMTLLKEAGPLGWQSLLGMPPG DSLYHRDIDFYILEEEHTDISPVAWEATVQKHVQEELYGSLLEETGLGLEHHLLRGRALAAFNHILGVRLQKLKKEGDSEGSPHWQNNVQSDVQMLLSPL VPSEESLLSSASKEFSNARLKIHVLTVLKSMQSKKKIGSPSSSDTAERSLPCSDDNVLIPVELFSVLADCEQQNSPGVALLRKAKEMSWSTLAMVASCFS EVSPLTCLTVWLEITAARETSSIKVNNVTTQIADNVLAAVEATNSLPTGTASPTCHYNRQNPKRRRIMEPISENKSLETSRVSSISSSTEKYISEDAIAE EIKAEFAERHTVSGDSDEGQVSLSKMVAVLCEQKLFLPLLRAFEMFLPSCSLLPFLRALQAFSQMRLSEASAHLGSFSARIRDEASSSQTNVGREASVGV QWISSTAVRAADAMLSTCPSAYEKRCLLQLLAATEFGDGGSAATYYRQLYWKINLAEPSLRKGDNVNLGDESLDDASLLEALEKNGYWEQARNWARQLGA SGGTWKSAVHHVTETQAESMVAEWKEFLWDVPEERVALWGHCQTLFIRYSFPPLQAGLFFLKHAEAVEKDLPAKELHELLLLSLQWLSGMITLSQPVYPL HLLREIETRVWLLAVESEAQIKCDGDFVSTSSTRDPVAGHPSNMIDKTASLVGKMDRHINSMKSKSVEIHESRENNLLHHKNQVADAGTSKTKRRTKGHF QPRKPYADPMDKAGADSDEIFASHAFRNDLQFLDESAKLEVSFSKWEERIETAEMERAVLSLLEFGQITAAKQLQHKLSPSDTPSEFIIVDAALTIAAIS TPWSKVSVSMINEDVRAVLQSYNICTEENIIDPLEVLESLVAIFTESRGRGLCKRIIAVVKAANVLGLSFSEAFDKQPFELLQLLSLKAQESFEEALLLV QTHTIAASSIAQILAESFLKGLLAAHRGGYMDSQKDEGPAPLLWRFSDFLKWAQLCPSEPEIGHALMRLVITGQEIPHACEVELLILSHHFYKSSACLDG VDVLVALAATRVDAYVSEGDYSCLARLLTGVGNFQALYFVLGILIENGQLDLLLQKFTAAADSDTETAVTVEGFRMAVLTALKHFNPQDLDAFDMGYNHF NMKHDIGALLESRAKACSEQWFRRYYKDQNEELLEAMRYSIEAAEVYFSMDAGNKTRRACSEASLVSLQIRMPDTKWLSLSETNARRILVEQSQFQEALI VAEAYGLNQPGEWVLVLWNQMLKPELTEAFVAEFVAVVPLQPSTLIELARFYRAEVAARGDQSQFSVWLTGGGMPAEWAKYLGRSFRCLLKVTWDLRLRL QLANIATGFGDVVDSCMKALDKVPDNGGPLVLRKGHGGGYLPLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39420			unknown protein		Lus10006813 [exp]	0	1
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	5.8	0.8790
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	6.5	0.8903
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	7.5	0.9108
AT1G14100		FUT8	fucosyltransferase 8 (.1)		Lus10041641 [exp]	9.2	0.8929
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	9.2	0.9098
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	9.2	0.9093
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	9.5	0.8555
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	11.8	0.8797
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	15.2	0.8627
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	15.5	0.8633

Compare expression of checked genes

Lus10006813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.