Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39420 517 / 1e-161 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005786 [exp] 913 / 0 AT4G39420 3258 / 0.0 unknown protein Lus10014011 [exp] 267 / 9e-86 AT4G39420 188 / 4e-56 unknown protein Lus10014010 [exp] 132 / 2e-36 AT4G39420 51 / 9e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G078650 [exp] 621 / 0 AT4G39420 3458 / 0.0 unknown protein Potri.005G086100 [exp] 593 / 0 AT4G39420 3493 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006814 pacid=23150734 polypeptide=Lus10006814 locus=Lus10006814.g ID=Lus10006814.BGIv1.0 annot-version=v1.0 ATGGATCGTTGTCAAGGTCCTGACGTGCTGCAATTGCTGAAGTGGGGGCCTACTGGTTTCCGGTATAATTTGTCAGATTACCGTGAAGCTTTTATATCTC CTACAAGGGAGCAACTACTATTGCTGTCTTATCAATGCGAAGCCTTACTGCTGCCGCTGGTTACAGGGGACTTCCCAAGTCAGAATGTTTCACAGGGTCT TCAAAATAAGTCCAGTGAAACTTCCAGCTCAGCAGCGTCGAGGAGAAGTAATACCTTGGGTTCCAAGGATGGTTCAAATACAGGCTCAGATTCTGATTCT GTTTTTTCTAGTGTCCATAAGATCCCAAGCTCTAGTAAGTACTCTTTTATTTATGGTGCAAACTCATTGGCTTGGGGTCTTTGTGGGGATAGCTATAATA GTCAGAATGATACCTCATTCAAAGAGCTTCTCTTTGTATCAAGTGGTGATCAAGTTGTTGTGCATGCATTCCGCCGAATTGAAAGAACAGTTGACAGCGA AATGTCAGTTTTGGGGGATCAATTTGGGGAAGGGAGGTGGGTGAAGTGGGGACCGCCTTCGGTTTCATTTCAAAATCTGGAACCAGATGAATCACTAGAA ATGCTCATGGATGTGAACCTGGCCGAGGAAGGGATTTTGAGATTGCTCTTTGCTGCAGTTTACTTGATGTCTCTCGGAAATGGAAATGATATTGAAGTTT CTGCTGCTTCAAGGCTCTATAATATGGGCCATTTTCTGGAGATTGTCCGGAATCTTCAATATCGACTTGGTGCTATGTCAAAACAGATTGGACAGGGATC GGTGGATGGCAGGGATGCATTAAGTTTTGCAGAAGTCAATGCATATCCCGATGAACCCCAACTTGCTCTTATTTTACCAAATGCTGCATCATTGGAGACG TTAAACCAGCTGCAGATATCTGAACCTGCAGCAGTCTCCAGCAGTGATAAGCTTGCTTTGGTGCCCGCAGATTCTGTGGATAATCGTTTTGATGCTGAAG ATTCAAATACGTCTATGGTTGTCTCTGATATTAGAAATAAAGGTTTGCCATTAGAAAATCCCATGGAGATGATTGCACGGTGGAAAGTAGATAATTTGGA CCTCCAAACTGTGGTTAAAGATGCACTTCACGCTGGCCGTCTGCCTCTAGCAGTTCTGCAATTGCACTTTCATCGTTCGAAAGAGATGAGCAGTGATAAG GAACCTCCTGATACTTTCGGCGAAGTTCGAGAGATTGGAAGAGCTATTGCTTACGACTTATTTCTAAAGGGAGAAACCAAACTGGCTATTGCAACTTTGC AAAGGCTAGGAGAAGAAGTTGAAAACTGTCTTAAGCAGTTGTTATTTGGCACCGTGAGGAGGTCTCTGCGAGTTCAAGTGACAGAGGAAATGAGAAGATA TAGTTACCTTGGAACATACGAGTGGAAAATTTTAGAGAAGATATCACTTATTGAGAGGCTTTATCCTAGCAGTAGCTTTTGGAGAACATTCCTTGGAAGA CAGAATGCATCAAAGAACGGGCTTGATTCTCCAATTAGGCTCCACCTGTTGAATTCACTTCCATATAGTGAGGCTGTTGTTCAGTGTGGTGAGATAGATG GGGTTGTTTTAGGTTCGTGGACAACGATTAGTGAAAATACTCCTGATCCTGAGGTAGGTGAAGATGAAGGACAAGCTGGATACTGGGCTGCTGCTGTGGT GTGGTCAGGTGCGTGGGATCAAAGAACTATAGATCGTATAGTGTTGGATCAGCCTTTTCTAATGGGAGTTCACGTTTTATGGGAGTCTCAATTGGAGTAT TACGCAAGCCACAATGACTGGGATGAAATTTCAAAATTAGTGGATATAATTCCTTCATCTGTTTTGGCAAATGGAAGCCTCCAGATTTCCCTGGATAGCT CACAGCAGACTCCAGCTGTAGGATATCGTTCTGAATTTTCAGACTATGGCAACTACATATCCATTGAAGAACTAGATGCCGTGTGCTTGGACATACCTGG GATCAAGATTTTCAGGTTTCCTGTCAGTGCAATATGCTCTACATGGTTGACGAGGCTTATTGAACAGGAGCTTGCTAAAAAGCATATATTTCTAAAAGAG TACTGGGGAGGAACTGCTGAAATTGTAGGTCTGCTGGCTCGTGCTGGCTTCATAAGCAGATCTAAAAATATACTAGTGGATGATGATAATGACGACGGTT TAACTAAGACCAAGTATTGGTACAATGCAGGGTTTGCATAA
AA sequence Show only first row Show all	>Lus10006814 pacid=23150734 polypeptide=Lus10006814 locus=Lus10006814.g ID=Lus10006814.BGIv1.0 annot-version=v1.0 MDRCQGPDVLQLLKWGPTGFRYNLSDYREAFISPTREQLLLLSYQCEALLLPLVTGDFPSQNVSQGLQNKSSETSSSAASRRSNTLGSKDGSNTGSDSDS VFSSVHKIPSSSKYSFIYGANSLAWGLCGDSYNSQNDTSFKELLFVSSGDQVVVHAFRRIERTVDSEMSVLGDQFGEGRWVKWGPPSVSFQNLEPDESLE MLMDVNLAEEGILRLLFAAVYLMSLGNGNDIEVSAASRLYNMGHFLEIVRNLQYRLGAMSKQIGQGSVDGRDALSFAEVNAYPDEPQLALILPNAASLET LNQLQISEPAAVSSSDKLALVPADSVDNRFDAEDSNTSMVVSDIRNKGLPLENPMEMIARWKVDNLDLQTVVKDALHAGRLPLAVLQLHFHRSKEMSSDK EPPDTFGEVREIGRAIAYDLFLKGETKLAIATLQRLGEEVENCLKQLLFGTVRRSLRVQVTEEMRRYSYLGTYEWKILEKISLIERLYPSSSFWRTFLGR QNASKNGLDSPIRLHLLNSLPYSEAVVQCGEIDGVVLGSWTTISENTPDPEVGEDEGQAGYWAAAVVWSGAWDQRTIDRIVLDQPFLMGVHVLWESQLEY YASHNDWDEISKLVDIIPSSVLANGSLQISLDSSQQTPAVGYRSEFSDYGNYISIEELDAVCLDIPGIKIFRFPVSAICSTWLTRLIEQELAKKHIFLKE YWGGTAEIVGLLARAGFISRSKNILVDDDNDDGLTKTKYWYNAGFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39420			unknown protein		Lus10006814 [exp]	0	1
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10034360 [exp]	1.0	0.9886
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	1.7	0.9790
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	2.0	0.9833
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	4.5	0.9781
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	5.9	0.9763
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	6.0	0.9761
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	6.5	0.9755
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	6.7	0.9709
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	8.1	0.9703
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	8.9	0.9723

Compare expression of checked genes

Lus10006814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.