Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20230 114 / 3e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 111 / 2e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 108 / 3e-28 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 107 / 8e-28 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 107 / 8e-28 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 107 / 1e-27 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 106 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 106 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 105 / 3e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 104 / 6e-27 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003382 [exp] 296 / 2e-103 AT4G16835 212 / 2e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004304 [exp] 288 / 2e-101 AT1G11290 123 / 2e-32 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019213 [exp] 277 / 6e-92 AT2G21090 376 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037063 [exp] 105 / 4e-30 AT4G37170 124 / 3e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027365 [exp] 105 / 8e-30 AT4G02750 133 / 3e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036921 [exp] 112 / 2e-29 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 109 / 2e-28 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 109 / 2e-28 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010850 [exp] 108 / 4e-28 AT5G60020 856 / 0.0 laccase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220300 [exp] 119 / 5e-32 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 118 / 9e-32 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 118 / 1e-31 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 114 / 4e-30 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 113 / 7e-30 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 112 / 1e-29 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 111 / 2e-29 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 111 / 3e-29 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 111 / 3e-29 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 110 / 6e-29 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006815 pacid=23150748 polypeptide=Lus10006815 locus=Lus10006815.g ID=Lus10006815.BGIv1.0 annot-version=v1.0 ATGGAGTTAGTCGAAAAAACTCCTGGTCTATCGGAGCATGCGGGGATATGGGGCGCTCTATTAGGTGCTTGTCGGATCCATCACAATGTGGGTCTTGCCA TGAAGGCTGCGGAAACTCTATTCAAATTAGAACCCGGGAATCCTGGAAGATATGTCATGTTAGCGAATGTTTATACATCAGCTAATAAATGGAGTGATGC TTCAAGAATGAGAAGGGAAGTGGATGAAAAAGGTCTAGTTAAAGATGTAGCTTACAGTTGGATTGAGGTGAGGAATGAGAGGCATGAGTTTGTGGCCAAG GACAAGGCTCACAGACAGATACAAGAAGTATATGAAGCAATCCCTCGACTACTTGATCATATGAGGGAAGCTGGACACTGGCCTTCCACAAATGACTTTG GATCGTCGGAGAAGATGATGTCCTAG
AA sequence Show only first row Show all	>Lus10006815 pacid=23150748 polypeptide=Lus10006815 locus=Lus10006815.g ID=Lus10006815.BGIv1.0 annot-version=v1.0 MELVEKTPGLSEHAGIWGALLGACRIHHNVGLAMKAAETLFKLEPGNPGRYVMLANVYTSANKWSDASRMRREVDEKGLVKDVAYSWIEVRNERHEFVAK DKAHRQIQEVYEAIPRLLDHMREAGHWPSTNDFGSSEKMMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20230			Pentatricopeptide repeat (PPR)...		Lus10006815 [exp]	0	1
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10003382 [exp]	1.0	0.8830
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	14.3	0.8258
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	19.0	0.8095
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	19.4	0.8057
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	21.4	0.8257
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	21.9	0.8016
					Lus10019215 [exp]	24.0	0.7825
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	24.1	0.7689
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	25.4	0.7813
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	27.3	0.8118

Compare expression of checked genes

Lus10006815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.