Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17140 58 / 1e-09 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003381 [exp] 101 / 2e-25 AT4G17140 52 / 3e-07 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10039773 [exp] 76 / 1e-17 AT4G17140 68 / 2e-14 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10011036 [exp] 77 / 7e-16 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003007 [exp] 77 / 8e-16 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148800 [exp] 56 / 6e-09 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006816 pacid=23150750 polypeptide=Lus10006816 locus=Lus10006816.g ID=Lus10006816.BGIv1.0 annot-version=v1.0 ATGTCGCTCTTTAGTCATGATAAGCTGCACTGGTTTGAGTTAGTTTATTGCTTGGCTCTATCATGGTCAATCATCGCTGGTCTCATTGCTAAGAATGCAA CTGCTTTTGACTCTTTATTTGGTATGTTCTGCTACAAGCCTTTTGGTGTGAAAGTGGATTGGATCTTGGTCGTGAAAGCTTCTCCGAGTTACATGACTGG TTATGGTGAACATTCAGGTATAACATCAAAGGATCAGGGCAGAAAGGTAGAAACAATGGATCTGATTAAAAGGGCTAAGTGGAAGCCTAAAATAAAGGAG AAAGTAGCAAACATGGTGCTGCCCTCTGGTGTGCAATATAAGGATCTTGGAGACGCTAAACTTGCAAAAGATTTTCAAACATTTCTAAGGATCTTGCAGG CGCTAAAATTGCCTCATGGTCTCATAGCTAAGAGTGCAATTGCTTTTGACTCTTCATTTGGCATATTCTGCTGCAAGCTTTTTGATCTGAAGGTGGATTG GAGCTTGGTTGTGAAGGCTTTTCCATGTTACATGTCTATGGTGGTGGTGCCCGCATTGATACCACAACAACATCTTGTCAAAGCTATGAAACCCCAAATT CAATTCGTCCCTGTTACAATTGGTTCTGCACATGTGGGCTCTAATTTCTCTATGGTGAAGAGCATGCATGAAGTTAAGGAAGGTTACATCATTCACTTTG ATATTACTTATTACTGA
AA sequence Show only first row Show all	>Lus10006816 pacid=23150750 polypeptide=Lus10006816 locus=Lus10006816.g ID=Lus10006816.BGIv1.0 annot-version=v1.0 MSLFSHDKLHWFELVYCLALSWSIIAGLIAKNATAFDSLFGMFCYKPFGVKVDWILVVKASPSYMTGYGEHSGITSKDQGRKVETMDLIKRAKWKPKIKE KVANMVLPSGVQYKDLGDAKLAKDFQTFLRILQALKLPHGLIAKSAIAFDSSFGIFCCKLFDLKVDWSLVVKAFPCYMSMVVVPALIPQQHLVKAMKPQI QFVPVTIGSAHVGSNFSMVKSMHEVKEGYIIHFDITYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	0	1
AT5G60370			unknown protein		Lus10023343 [exp]	3.0	0.8668
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	4.0	0.8441
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	9.8	0.8114
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032873 [exp]	11.4	0.7907
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008403 [exp]	13.7	0.7513
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	14.7	0.7989
					Lus10007146 [exp]	15.3	0.8044
AT1G27750			nucleic acid binding (.1)		Lus10007756 [exp]	17.0	0.7584
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	17.5	0.7801
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040568 [exp]	21.1	0.8087

Compare expression of checked genes

Lus10006816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.