Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39400 1230 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 887 / 0 BRL1 BRI1 like (.1.2) AT3G13380 881 / 0 BRL3 BRI1-like 3 (.1) AT2G01950 839 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G07280 514 / 3e-162 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74360 461 / 4e-143 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 437 / 4e-134 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 432 / 2e-132 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 430 / 2e-130 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 421 / 4e-129 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005784 [exp] 1964 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 1397 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 1379 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 827 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10039132 [exp] 823 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038875 [exp] 479 / 2e-148 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 472 / 1e-145 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10019722 [exp] 436 / 7e-134 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10005403 [exp] 430 / 5e-132 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G086500 [exp] 1290 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 1283 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 918 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 910 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 854 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 837 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.012G139000 [exp] 501 / 4e-156 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 494 / 1e-153 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G074000 [exp] 449 / 8e-139 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 446 / 2e-137 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006817 pacid=23150771 polypeptide=Lus10006817 locus=Lus10006817.g ID=Lus10006817.BGIv1.0 annot-version=v1.0 ATGACGAACCAAACCCATTTCCTCCTCCGCCTCATCTCCCTCTCCCTCCTCCTCACCGCCGTTTCTCCGGCCACCACCACTAAAGACACCCTCTTGACCT TCAAATCCTCCTTACCAAACCCATCTCTCCTCCCCAACTGGCTCCCCAATCAAAACCCTTGCTCCTTCACCGGGGTGAAATGTTCATCATCTCTTTCAAA CGGTGTCGTTTCCTCCATAGACCTCAGCTTCATCCCTTTAAGCACTGCAAATTTCACCTCCCTCTTATCAATCGCCTCCCTCCAATCCTTATCCCTCCGC TCTTCCAACCTCCGCTCACCCACCCTCACCGGCTGCTCCAGCGGCTCGATTGAGCCGCCGGTGTCTTCTTGCTCATCTGTTTTAACCGAGCTAGATCTCT CTGGAAACTCCATTTCTGGCTCTCTCTCGCCGTTGATTACATCCTGCTCGAATCTGAAATCCTTGAACCTGTCAAGCAACTCCTTTGGTCCGGACCTGAA CTTTTCCCTCCTCGATTCACTTGAAACAGTTGATCTCTCGTGGAATAAGCTAATCTCCGGTGGTAAAAACGGCATGTCGTTTGGTGGGTGTGGAAAGCTG AAGACTTTATCACTCAGAGGGAATAAGCTCTCCTCCGGCGGAGGAGCAAGAGGACTCGACTTCTCGCGGTGTGAGAAATTGGAGTATCTTGATATCTCGT CCAACAATTTCTCCTCTTTGGGTCCTGATTTTGGTAGCTGCGAGAAATTGGACCACCTCGACATCTCCGGCAATAGATTCTCCGGTGAGCTGGGCACTCT CCTATCTAGCTGCGAGAATCTCTCGTTTTTAAACGTCTCCAGCAACCAATTCTCCGGCGAAATCCCCGCCGTGGGGATAAAGAAGAAGTTGAAGTCTCTG TATCTGTCCGGCAACCAATTCCACGGTGAGATTCCGGTGAGTCTCGTCGACGATTTGTGTCCAGGTCTTGTGAATCTCGATCTATCTTTGAACAATCTCA CCGGTTCGATTCCTTCTGGGTTTGAAAGATGTTCATTGTCGCTGGAAAGTTTTGACCTTTCTGTCAACAACTTCACCGGCGAGCTCCCTGTTTCTACACT GCTGAAATTAAAACGGCTGAAGAAGATTGATCTCGCGTTCAACAACTTCGCCGGCCGGCTACCGGATTCTTTCTCCGAGCTTGCTGATTTGGAAATCCTA GATGTGAGCTCCAACGATCTGATTGGGGAGATTCCTCCTTTGATTTGCAGGGAGAGCAAGCTGAAAGAGCTTTACTTGCAGAACAATCAGTTCACTGGTA AGATTCCGGAATCATTGAGCAACTGTACGGAGTTGAGGGCTCTTCATTTGAGCTTCAATTATTTAACCGGTACGATCCCTCCAAGCTTGGGATTGCTGAG CAATCTTCAGGATTTGAAGCTCTGGTTCAACCAGCTCCACGGAGAAATCCCGCTGGAGATAATGTCGATCAAGACGTTGACTGCTTTGATCCTCGACTTC AACGAGCTTACTGGTTCGATTCCTCTGAGCATAAGCAACTGCACGAACTTGAATTGGATTTCGTTGTCGAACAATCGTCTCGAGGGAGAGATTCCCGGTT CAATCGGGCAGCTTTCGAGCCTCGCGATCTTGAAGCTGAGCAATAACTCGTTGACAGGTCCGATCCCAGCTGAGCTTGGTGACTGCAAGAGCTTGATATG GTTGGATTTGAACAGCAATGGATTAACCGGTTCGATTCCGCCCGATCTGTTCAAGCAATCGGGCAACATTGCTGTGAACTTCATCACAGGGAAGAGATAC GTTTACTTGAAGAATGACAAGAGTGAGCAATGTCACGGTACCGGAAACTTGCTTGAATTCGCGGGGATAAGGTCAGAGAATCTCGACAGGGTCTCGACGA GGAATCCTTGTAACTTCACAAGGATTTACAATGGCCACACGCAGCCGACGTTCAACAACAACGGATCGATGATCTTCCTCGATCTTTCCTACAATGCGCT GTCGGGAGGCATTCCGAAAGAGGTACGGACAATGTCGTATCTCTTCATTATGAATTTGGCCCATAACAACCTCTCCGGCCAAATCCCTGAAGAGCTCGGC CAGCTGAAAGGTCTCAACATTCTCGACCTGTCAAGTAACAAGCTAGAAGGGAGAATTCCTCAGTCGATGACCGGGATGTCGTTGCTGAACGAAATCGATA TGTCGAATAATAATCTCGTCGGAATGATCCCCGAGATGGGCCAGTTCGAGACGTTCCAAGCTCAAAGCTTCGTCAACAATTCCGGCCTATGTGGGATACC TCTCCCACCCTGTGGTGGATCCGGACGTGATCCAGGTCCATCGAGGTCCTCTTCTCGCAGGACGAGGACCTCATTGGCTGCGAGTATCGCAATGGGACTT GTGGTGTCGATGTTCTTCATCCTCGCTGTGTTCCTCTTTGTAATGGAGCTTAAGAAGAGGAAGAAAAGAAAGGAATCTGATGATGTGTTCATGGAGAATT CTCATAATCATTCAGGGAATGGATGGAAGTTGACAGGAGCGAGGGAGGCTTCGTTAAGCATAAACCTCGCGACGTTCGAGACTCCATTACGGAGGCTGAC GTTCGCCGATCTCCTCGAGGCGACCAACGGCTTCCACAACGACAGCCTCGTAGGTTCCGGAGGGTTCGGAGACGTGTACAAGGCTCGGCTGAAAGACGGC AATGTGGTGGCAATAAAGAAATTGATCCACGTAAGCGGCCAGGGCGATCGAGAATTCACGGCTGAAATGGAGACGATCGGGAAAATCAAGCACCGGAACC TCGTTCCGTTGCTTGGATACTGCAAAATCGGGGAAGAGAGGCTGCTTGTTTATGAGTACATGAAGTATGGAAGCTTGGAAGACGTGTTACATCGCTCCGG TACAGGGACCGGTACCGGAATGATCAAGCTCGATTGGAACGCGAGGCGGAGGATCGCGATCGGGGCGGCGAGAGGTTTAGCCTTCCTGCACCATAACTGC ATCCCTCATATTATCCACCGTGACATGAAGTCGAGCAATGTGCTTCTAGACGAGAATCTCGATGCGAGGGTATCCGATTTCGGGATGGCGAGGCTGATGA GCGCGATGGACACACACTTAAGTGTGTCCACATTAGCAGGCACTCCCGGGTACGTCCCTCCCGAGTACTACCAGAGCTTCAAATGCTCGGTGAAAGGTGA CGTGTACAGTTACGGAGTAGTTCTGCTCGAGCTTTTAACCGGAAAGAGACCGACCGATTCAGAGGATTTCGGGGATAACAACCTTGTAGGGTGGGTGAAG CAGCATGCCAAGCTGAAAATAACCGATGTGTTCGATCAGGAGTTAATGAAGGAGGATCCGGGGCTGGTGATCGAGCTTTTGGAGCATTTGAAAGTGGCGA GCGCTTGTCTCGATGACCGGCCTTGGAAGCGGCCGACGATGATCCAGGTCATGGCTATGTTTAAGGAGATTCAAGCCGGTTCGGGGGTGGATCCTGAGTT GATTGGTGGTGGTGGTGTAGAGATGGTGGTGATTAAAGAGGTGCCTGAACAAGGGTGCAAGTAG
AA sequence Show only first row Show all	>Lus10006817 pacid=23150771 polypeptide=Lus10006817 locus=Lus10006817.g ID=Lus10006817.BGIv1.0 annot-version=v1.0 MTNQTHFLLRLISLSLLLTAVSPATTTKDTLLTFKSSLPNPSLLPNWLPNQNPCSFTGVKCSSSLSNGVVSSIDLSFIPLSTANFTSLLSIASLQSLSLR SSNLRSPTLTGCSSGSIEPPVSSCSSVLTELDLSGNSISGSLSPLITSCSNLKSLNLSSNSFGPDLNFSLLDSLETVDLSWNKLISGGKNGMSFGGCGKL KTLSLRGNKLSSGGGARGLDFSRCEKLEYLDISSNNFSSLGPDFGSCEKLDHLDISGNRFSGELGTLLSSCENLSFLNVSSNQFSGEIPAVGIKKKLKSL YLSGNQFHGEIPVSLVDDLCPGLVNLDLSLNNLTGSIPSGFERCSLSLESFDLSVNNFTGELPVSTLLKLKRLKKIDLAFNNFAGRLPDSFSELADLEIL DVSSNDLIGEIPPLICRESKLKELYLQNNQFTGKIPESLSNCTELRALHLSFNYLTGTIPPSLGLLSNLQDLKLWFNQLHGEIPLEIMSIKTLTALILDF NELTGSIPLSISNCTNLNWISLSNNRLEGEIPGSIGQLSSLAILKLSNNSLTGPIPAELGDCKSLIWLDLNSNGLTGSIPPDLFKQSGNIAVNFITGKRY VYLKNDKSEQCHGTGNLLEFAGIRSENLDRVSTRNPCNFTRIYNGHTQPTFNNNGSMIFLDLSYNALSGGIPKEVRTMSYLFIMNLAHNNLSGQIPEELG QLKGLNILDLSSNKLEGRIPQSMTGMSLLNEIDMSNNNLVGMIPEMGQFETFQAQSFVNNSGLCGIPLPPCGGSGRDPGPSRSSSRRTRTSLAASIAMGL VVSMFFILAVFLFVMELKKRKKRKESDDVFMENSHNHSGNGWKLTGAREASLSINLATFETPLRRLTFADLLEATNGFHNDSLVGSGGFGDVYKARLKDG NVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLEDVLHRSGTGTGTGMIKLDWNARRRIAIGAARGLAFLHHNC IPHIIHRDMKSSNVLLDENLDARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFKCSVKGDVYSYGVVLLELLTGKRPTDSEDFGDNNLVGWVK QHAKLKITDVFDQELMKEDPGLVIELLEHLKVASACLDDRPWKRPTMIQVMAMFKEIQAGSGVDPELIGGGGVEMVVIKEVPEQGCK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10006817 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006819 [exp]	1.0	0.7626
AT4G30010			unknown protein		Lus10001623 [exp]	4.9	0.6610
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10002958 [exp]	8.4	0.5568
AT1G32260			unknown protein		Lus10030982 [exp]	10.2	0.5744
AT5G10010			unknown protein		Lus10006823 [exp]	14.1	0.7361
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	30.2	0.5431
					Lus10010603 [exp]	38.8	0.5814
AT1G08710			F-box family protein (.1.2)		Lus10020340 [exp]	53.2	0.5144
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	54.0	0.4740
AT5G44450			methyltransferases (.1)		Lus10028142 [exp]	55.7	0.4828

Compare expression of checked genes

Lus10006817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.