Plant FIBer expression Database

Lus10006818 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16970 676 / 0 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005783
[exp]
1030 / 0 AT1G16970 703 / 0.0 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G107400
[exp]
786 / 0 AT1G16970 922 / 0.0 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Potri.006G132501
[exp]
57 / 9e-10 AT1G16970 52 / 2e-08 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03730 Ku_C Ku70/Ku80 C-terminal arm
CL0616 SPOC PF02735 Ku Ku70/Ku80 beta-barrel domain
CL0306 HeH PF02037 SAP SAP domain
CL0128 vWA-like PF03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain
Representative CDS sequence
>Lus10006818 pacid=23150749 polypeptide=Lus10006818 locus=Lus10006818.g ID=Lus10006818.BGIv1.0 annot-version=v1.0
ATGGATTTGGATCCCGAAGACGTCTTCAAAGACGATGATGAAGATGAAGATAGCGAGTTTTTCCAGGCAGATGGGAGGGACGAAACTCATTTCCACATAG
CAGTTAGCTGCGTTGCACAATCTCTGAAGACGCTTATAATCAACAACTCGTATAATGAAATTGCCATCTGTTTCTTTAACACGACGGAGAAGAAGAATGA
GCAGGATCTCAGTGGGGTGTTTGTGTTTGATGTTGCTGAGAGAGAGCATTTGGATAGGCCAACAGCAAGACTTATAAAGGAATTTGACTGTGTTCAAGAA
TCATTCACGAAAGAAATCGGCAGTCAATACGGTATTGTATCTGGGTCGTGGGAGAACTCACTTTACAATGCTCTTTGGGTGGCACAAGCGTTGCTTCGCA
AAGGATCAGCGAAGACAGCTGAGAAACGGATACTTCTCTTCACAAATGAAGATGATCCATTCAGGAACATCCGTGGTGTAGCTAAAGCAGACATGATACG
AACTACATTGCAACGGGCTAAGGATGCCCAAGATCTTGGCATTTCAATTGAGATACTTCCCTTGAGTCGTCCAGATGAGGATTTCAAAATTTCGACTTTC
TATGCTGATTTGATTGGCTTAGAAGGTGACGATCTTCCGGAATTCATGCCCTCTGCTGGACGGAAGGTCAATAACGTGGCTGGATTCAGTGACCAATCGT
CCTTTGAAGGTAACAGTGCACCATTTGTACACGTGGTTTTTTGCTCGAATACAGAAATATCTTTTATCTGTGCCGATACTGGTGCACTGATCCAGGAACC
AACAAAGCGCTATCAACGCTATAAGAACGAGTACGTCAAGTTTTCAGAAGAGGAGCTAAGGGAGATCAAAAGAGTATCCGCAGGGCATCTACGTCTTCTT
GGATTCAAGCCTTTAAGCTGTTTGAAAGATTATCACAATCTAAGGCCTACGACGTTTGTTTTCCCCAGTGACAAGGAAGTGGTCGGTAGCACCTGCACTT
TTATTGCCCTGCACAGAGCCATGATACAGCAACAGCGATTTGCTTTGGCATTTTACGGTATCTCAACTAATCCCCGATTGGTTGCCCTTGTTGCTCAAGA
TGAGATTGTCTCTGGCGGTGGCCAGATTGAGCCACCAGGCATGCACATGATATTTCTGCCGTACTGTGAAGATATCAGAGACATAGAACGGCGTCAGGCA
ACCATTGATCATCAACCCGCACCACGAGCAACCGAAGAACAAATAAACAAGGCCGCCACTTTACTCAAACGGATCTACTTGAAAGACTTTTCAGTATGCC
AATTTTCTAACCCTGCGTTGCAGAGGCACTACGCAGTGTTGCAGGCGCTAGCTCTCGACGAAGACGAGATGCCGGAAATCAAGGACGAAACGCTGCCAGA
TGAAGAAGGCATGGCCAGGTTAGCAAATGACTTCTCCCTCACGTTTCAGCTGATCATATCTGGAATGCCTTCTCCCTCACGTTTCCCAATCGTATGGCTT
GCTAGACCGGCTGTCGACAAGGCCATAGAAGACTTCAAAGCTTCGGTCTACGGAGAAGGCTACAATGAGGTCGACGACATTCCGGGACCAAGCGAGGCCT
CGAAGAAACGGAAAGCTGCATCGGAATTCGTCTCTCAGGAATACAAGAACTACAGCTGGGAAGAACTCGCCGATGGTGGACAGCTGAAGGATTTGACAGT
GGTAGAGCTGAAGTACTACTTGGCAGCCCACAAGCTCCCGCTGGCTGGGAAGAAAGAAGCGCTGATCCGCAGAATCTTGATCCACATGGGGAAATGA
AA sequence
>Lus10006818 pacid=23150749 polypeptide=Lus10006818 locus=Lus10006818.g ID=Lus10006818.BGIv1.0 annot-version=v1.0
MDLDPEDVFKDDDEDEDSEFFQADGRDETHFHIAVSCVAQSLKTLIINNSYNEIAICFFNTTEKKNEQDLSGVFVFDVAEREHLDRPTARLIKEFDCVQE
SFTKEIGSQYGIVSGSWENSLYNALWVAQALLRKGSAKTAEKRILLFTNEDDPFRNIRGVAKADMIRTTLQRAKDAQDLGISIEILPLSRPDEDFKISTF
YADLIGLEGDDLPEFMPSAGRKVNNVAGFSDQSSFEGNSAPFVHVVFCSNTEISFICADTGALIQEPTKRYQRYKNEYVKFSEEELREIKRVSAGHLRLL
GFKPLSCLKDYHNLRPTTFVFPSDKEVVGSTCTFIALHRAMIQQQRFALAFYGISTNPRLVALVAQDEIVSGGGQIEPPGMHMIFLPYCEDIRDIERRQA
TIDHQPAPRATEEQINKAATLLKRIYLKDFSVCQFSNPALQRHYAVLQALALDEDEMPEIKDETLPDEEGMARLANDFSLTFQLIISGMPSPSRFPIVWL
ARPAVDKAIEDFKASVYGEGYNEVDDIPGPSEASKKRKAASEFVSQEYKNYSWEELADGGQLKDLTVVELKYYLAAHKLPLAGKKEALIRRILIHMGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16970 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMO... Lus10006818
[exp]
0 1
AT5G10010 unknown protein Lus10006823
[exp]
1.4 0.8045
AT2G42010 PLDBETA1 phospholipase D beta 1 (.1) Lus10006819
[exp]
4.2 0.7477
AT5G52850 Pentatricopeptide repeat (PPR)... Lus10014950
[exp]
10.4 0.7375
AT2G18220 Noc2p family (.1) Lus10025551
[exp]
12.2 0.7702
AT5G44450 methyltransferases (.1) Lus10028142
[exp]
22.6 0.6362
AT4G00230 XSP1 xylem serine peptidase 1 (.1) Lus10000395
[exp]
25.7 0.7631
AT3G24550 ATPERK1 proline-rich extensin-like rec... Lus10022129
[exp]
49.7 0.7436
AT5G15550 Transducin/WD40 repeat-like su... Lus10037439
[exp]
82.7 0.7190
AT2G01730 ATCPSF73-II, ED... embryo sac development arrest ... Lus10035763
[exp]
91.7 0.6390
AT1G53720 ATCYP59, CYP59 cyclophilin 59 (.1) Lus10031194
[exp]
137.8 0.6498

Lus10006818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.