Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42010 1427 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 1348 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 1228 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 1212 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 1177 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 901 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT3G15730 705 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 703 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 661 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 491 / 3e-159 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005782 [exp] 1889 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 1231 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 1230 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10026375 [exp] 1104 / 0 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 936 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 933 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10042282 [exp] 909 / 0 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 883 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 843 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G074700 [exp] 1448 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 1439 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 1270 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 964 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 936 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 928 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 882 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 882 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G193000 [exp] 707 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.018G131200 [exp] 700 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10006819 pacid=23150774 polypeptide=Lus10006819 locus=Lus10006819.g ID=Lus10006819.BGIv1.0 annot-version=v1.0 ATGGATCATGATGGATCTTCATACCCATATAACAATTCTTACCCGTATCCCTACCCACCGCCGCCCGGAACTCAATACCCTCCTCCTCCGGTGAACTATC AATACCCTCCTCCGGCCAACTATCAATACCCTCCTCCAGCCAACTATCAATACCCTCCTTCAAATTATCACTACCCATCTCCTCCTCCTCCCACTTACGG CTATCCTCCCCCTCCATCTGCATATCCTTCCGAAACGCCGCCGTATTCAGCCGCTACTCCTTCTGCACCATTGGAGTATCAACATCATGCTTACTCGCAA CCACAGCAGCACCCACTTATGCAACATCAAGGCAGCTTCCAACATACTTCCTCCTCTGCATCTTTTCATTACCCCCCTCCTCCTCATGAGATTGCCACTC AAGTTGGTCCTCCTGCTCATGGACATGGTAGACATGAGAGCTGTCCTCCAATGGGGATTAACAATGATAATTATCCTATTGATACTCCTCCTTCCACGTC CTCTGTTCCATCTGCCTACCCGCCTCTGGATGACTTGTTGGCTAATGTGCATTTGAATGATCACGGTGGCACACCACCTTCTGTTGGTGCTACTCCTCCA GCTCCGTCTGCATTGCCTGAATCTCCTTCGCTTCACCATCAGAGTTCCAGTGTGGGACAGTACAGCCAGGGGGGGTTCTATGGCTATCCTAATGACTCTT TTACGACTCACTATGAGGGAGGAGCTTATATGGGGAGACAAGATTCGTTTGGTACTGCTTCGCCCAGTGCTCATCCTTATTCACCTTCCTTTGACGGGTC ATCACCACCGCAAGGCTCTTCGCTGCAGGTTGTGCCATTTGGTACCAGAGGGTCCTTGAGGGTTTTGCTCCTACACGGGAATTTGGATATTTGGGTTTAT GATGCGCAGAAGCTTCCAAATATGGACATGTTTCACAAGACTTTAGGGGATATGTTCAATAAAATCCCGTCCAAGATTACCAGTGATCCGTATGTTTCGA TTTCAGTAGGAGGTGCTGTTTTGGGGAGAACTTATGTTATTAGTAATAGTGAAGATCCTATTTGGTTGCAACACTTCAATGTTCCCGTTGCACATTCTGC TGCTGAAGTGCACTTCGTTGTAAAAGACAGTGATGTCGTGGGGTCACAGCTCATCGGAGTTGTCTCAATACCAGTGGAGCAAATATATTCGGGCTCTAAA GTCGAGGGAATTTACCCGATTCTCAATAGCAATGGAAAACCATGCAAGCCTGGAGCTATGTTGAGAATTTCTATTCAGTACATACCTATGGAAAGGTTGA GCATTTACCATTTCGGTGTTGGAGCTGGCCCTGATTATCAAGGTGTTCCAGACACATATTTTCCTCTTAGAAAAGGTGGGATAGTAACTCTTTATCAGGA TGCACATGTTCCAGATGGGTGCCTTCCAAATGTACAACTTGATCATGGACTGTCCTATGTGAATGGTCAGTGCTGGATTGACATCTTTAATGCAATACGG CAAGCTCAGCGGTTGATTTATATTACTGGATGGTCAGTATGGCACAAAGTTAAACTGATCAGGGATGCTGCTTATCCGTTTGATATCACGTTAGGGGAGC TTCTCAGGTCTAAATCCCAGGAGGGAGTCAGAGTGTTGCTTCTTGTTTGGGACGATCCTACATCAAGGAGCATTTTGGGATACAAAACTGATGGAATTAT GGCAACTCATGATGAGGAAACACGTCGTTTCTTTAAACATTCATCAGTGCAGGTATTGCTTTGTCCCCGAATTGCAGGGAAGAAACATAGCTGGGTTAAG CAAAGGGAAGTTGAAACCATCTATACACACCATCAGAAGACTGTGATAGTAGATGCTGATGCTGGCTATAATAGGAGAAAAATTATTGCATTTGTTGGAG GGCTTGATATTTGTGATGGGCGATATGACACTCCACATCACCCGCTGTTTAGGACGCTCGAGACAGTTCATAAAGATGACTATCACAACCCTACGTTCAC GGGAAGTGTTTCTGGTTGCCCTAGAGAACCATGGCATGACCTGCACTGTAGAATTGATGGCCCTGCTGCATATGACGTCCTCGCTAACTTCGAGGAGCGC TGGTTGAAAGCTGCCAAACCCCATGGATTGAAAAAGCTGAAGCATTCATATGATGATGCTTTATTAAGGATAGACAGGATTCCTGATATTGTAGGAGTTT CTGATGCTCCTTATGTTGCCGAAGACCATCCAGAGGCTTGGCATGTCCAAGTCTTCCGTTCAATTGATTCAAATTCGGTTAAAGGTTTCCCGAAGGATCC AAAAGATGCCACAGCAAAGAATTTGATGTGCGGAAAGAATATACTGATTGATATGAGCATACACACGGCATATGTAAAGGCTATCCGTGCTGCTCAGCAC TTTATATACATAGAAAATCAGTATTTCATTGGATCATCCTACAGCTGGAGATCATATAAAGATCTGGGAGCTAATAACTTAATCCCAATGGAAATTGCGT TAAAGATTGCTGACAAAATCAAAGCACATGAGAGATTTGCTGCTTACATCGTCATTCCAATGTGGCCCGAAGGAGTTCCGACTGGCGCTGCTACCCAAAG AATTCTTTTCTGGCAGCATAAAACCATGCAAATGATGTACGAGACGATATACAAGGCTTTGCAAGAAGCTGGTCTGGAAAATCAATACTCACCTACTGAT TATTTGAACTTCTTCTGTCTTGGAAACCGCGAAGCGCTGAGTCTGAATAGCTCTGCCAGCGTGTCGAGTCCCCATGCGCCGAATTCCCCTCAGGCACTTG CTCGAAAGTCTCGGAGGTTCATGATTTACGTACATTCGAAAGGGATGATCGTGGACGATGAGTACGTAATAATAGGGTCAGCGAACATAAATCAGCGGTC GATGGAGGGTGCAAGAGACACGGAGATCGCCATGGGAGCATACCAACCTCAACATACTTGGGCAAGAAAGCAACGCAACCCACTTGGACAGATTTACGGG TACAGGATGTCACTATGGGCGGAGCATCTCGCAACAGTCGAGGACTGCTTCTCGCAGCCAGAGAGTCTGGACTGCATGAGACGAGTTCGGTACATCGGGG AGGCTAACTGGAAACAGTTTGTCGACGACGAAGTAAGCGAGATGAGAGGGCACCTGATGAAGTACCCGGTTGAGGTTGATCAAACCGGGAAGGTGAAACC TCTCCCTGGTTGCGAAACTTTCCCAGATGTTGGTGGGAATATTACTGGCTCGTTCATTGCCATCCAGGAGAATCTGACCATTTGA
AA sequence Show only first row Show all	>Lus10006819 pacid=23150774 polypeptide=Lus10006819 locus=Lus10006819.g ID=Lus10006819.BGIv1.0 annot-version=v1.0 MDHDGSSYPYNNSYPYPYPPPPGTQYPPPPVNYQYPPPANYQYPPPANYQYPPSNYHYPSPPPPTYGYPPPPSAYPSETPPYSAATPSAPLEYQHHAYSQ PQQHPLMQHQGSFQHTSSSASFHYPPPPHEIATQVGPPAHGHGRHESCPPMGINNDNYPIDTPPSTSSVPSAYPPLDDLLANVHLNDHGGTPPSVGATPP APSALPESPSLHHQSSSVGQYSQGGFYGYPNDSFTTHYEGGAYMGRQDSFGTASPSAHPYSPSFDGSSPPQGSSLQVVPFGTRGSLRVLLLHGNLDIWVY DAQKLPNMDMFHKTLGDMFNKIPSKITSDPYVSISVGGAVLGRTYVISNSEDPIWLQHFNVPVAHSAAEVHFVVKDSDVVGSQLIGVVSIPVEQIYSGSK VEGIYPILNSNGKPCKPGAMLRISIQYIPMERLSIYHFGVGAGPDYQGVPDTYFPLRKGGIVTLYQDAHVPDGCLPNVQLDHGLSYVNGQCWIDIFNAIR QAQRLIYITGWSVWHKVKLIRDAAYPFDITLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGIMATHDEETRRFFKHSSVQVLLCPRIAGKKHSWVK QREVETIYTHHQKTVIVDADAGYNRRKIIAFVGGLDICDGRYDTPHHPLFRTLETVHKDDYHNPTFTGSVSGCPREPWHDLHCRIDGPAAYDVLANFEER WLKAAKPHGLKKLKHSYDDALLRIDRIPDIVGVSDAPYVAEDHPEAWHVQVFRSIDSNSVKGFPKDPKDATAKNLMCGKNILIDMSIHTAYVKAIRAAQH FIYIENQYFIGSSYSWRSYKDLGANNLIPMEIALKIADKIKAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALQEAGLENQYSPTD YLNFFCLGNREALSLNSSASVSSPHAPNSPQALARKSRRFMIYVHSKGMIVDDEYVIIGSANINQRSMEGARDTEIAMGAYQPQHTWARKQRNPLGQIYG YRMSLWAEHLATVEDCFSQPESLDCMRRVRYIGEANWKQFVDDEVSEMRGHLMKYPVEVDQTGKVKPLPGCETFPDVGGNITGSFIAIQENLTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006819 [exp]	0	1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10006817 [exp]	1.0	0.7626
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10006818 [exp]	4.2	0.7477
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	6.3	0.6232
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	7.7	0.6842
AT5G44450			methyltransferases (.1)		Lus10028142 [exp]	10.7	0.5845
AT1G77310			unknown protein		Lus10028666 [exp]	13.4	0.5637
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	16.9	0.6020
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10040162 [exp]	17.9	0.6327
AT5G17630			Nucleotide/sugar transporter f...		Lus10004312 [exp]	29.4	0.6798
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	55.2	0.5692

Compare expression of checked genes

Lus10006819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.