Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09970 259 / 7e-84 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT2G46660 184 / 6e-55 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 178 / 1e-52 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G13710 172 / 2e-50 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G74110 169 / 3e-49 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G01190 159 / 3e-45 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT4G37340 82 / 6e-18 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37430 79 / 1e-16 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G31500 78 / 3e-16 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT5G67310 77 / 5e-16 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005780 [exp] 366 / 3e-125 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10036627 [exp] 293 / 7e-97 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 286 / 4e-94 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005995 [exp] 184 / 5e-55 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 182 / 5e-54 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10001670 [exp] 158 / 3e-45 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 157 / 9e-45 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10015788 [exp] 145 / 5e-41 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10018717 [exp] 87 / 1e-19 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084500 [exp] 271 / 1e-88 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 266 / 1e-86 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 257 / 4e-83 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G200400 [exp] 254 / 6e-82 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.014G102700 [exp] 180 / 3e-53 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 176 / 6e-52 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 172 / 2e-50 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 171 / 6e-50 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G173500 [exp] 157 / 6e-45 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.001G054800 [exp] 147 / 6e-41 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10006821 pacid=23150742 polypeptide=Lus10006821 locus=Lus10006821.g ID=Lus10006821.BGIv1.0 annot-version=v1.0 ATGGCTCTGAGCCTCGGTGGGTCCACCCGGCTGGTGGTGACATCTGACCCCACCACTGCTCGAGAGATCTTAACCTCTCCATCGTTCACGGACTGGCCCA TAAAGCAGTCGGTAAAGAGCCTGATGTTCAGTCGTGCCATTGGGTTCGCTCCCGACGGGACCTACTGGCGGAACCTGAGGAGGATCGCATCGACCCACCT CCTTTCACCACGTAGGATCTCGGCCCATGAGGGACTACGCCAAGCGGAGTGTACCACAATGCTTGGGAACATAGCTCAGGAGGCAAAAGCAAGTGGTGGA ACTGTATCTTTGCGGTCTCACCTCCAGCTGGCCTCTCTCAATAATATAATGGGGTCCGTGTTTGGGAAAAGATATGACCCCATCCAGGATCGAGTCGAGT TAAACAGGTTGGAGGAGATGGTTCGTGAAGGGTTCGGCCTTTTGGGCGCGTTCAACTGGTCCGATTACTTGCCGTGGATGAGTTGGTTCTACGACCCGCT TCGGGTCAACCAACGTTGTGCCGTACTCGTGCCAAAAGTCGAGGAACTCGTCAGGGGAATCATCGAAGAGCATCGTGGCCGTGGACCTCCGGCTGGCATC GTTCGGTGCTGGTCGGAGAGTCTGTCATGGGAAGAACTTAGAGATGGTGACTGTGGCCACGTGGGTGGCGAAGCTAGTGGCCGGGTTCAAGTGGTTCGAG GACCCGACCCACCCCGTGGATCTCGATGA
AA sequence Show only first row Show all	>Lus10006821 pacid=23150742 polypeptide=Lus10006821 locus=Lus10006821.g ID=Lus10006821.BGIv1.0 annot-version=v1.0 MALSLGGSTRLVVTSDPTTAREILTSPSFTDWPIKQSVKSLMFSRAIGFAPDGTYWRNLRRIASTHLLSPRRISAHEGLRQAECTTMLGNIAQEAKASGG TVSLRSHLQLASLNNIMGSVFGKRYDPIQDRVELNRLEEMVREGFGLLGAFNWSDYLPWMSWFYDPLRVNQRCAVLVPKVEELVRGIIEEHRGRGPPAGI VRCWSESLSWEELRDGDCGHVGGEASGRVQVVRGPDPPRGSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	0	1
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	1.4	0.9130
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	1.7	0.8909
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	2.0	0.8718
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	2.4	0.8925
					Lus10005608 [exp]	7.1	0.8137
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	8.1	0.6890
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	9.3	0.7917
					Lus10019580 [exp]	11.8	0.7955
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10036008 [exp]	11.8	0.6744
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	13.0	0.7387

Compare expression of checked genes

Lus10006821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.