Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21960 178 / 3e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005779 [exp] 204 / 1e-64 AT2G21960 465 / 6e-166 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084400 [exp] 191 / 2e-59 AT2G21960 449 / 8e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006822 pacid=23150741 polypeptide=Lus10006822 locus=Lus10006822.g ID=Lus10006822.BGIv1.0 annot-version=v1.0 ATGATAGCTATTCCTTCTACTTCTTCAATGACTTCTTCCATTTCTACAACCTCCATTGCCATTCACAGACTCCGCATCCAATCAGTCTCCGTAGCGGCCG CCACATCATCATCGTCTTCCTCCTCGTCGACAATCGATCTCAAAGCCCTCGAATCGGCCATTTCCAAGAAGGATAGCAATGCAGTGAAGGAGGCGCTTGA TGAGCTAACCAAAGCTGGCTGGGCGAAGCAATGGAGTTCTCAGCCTTATGTCTCTCGTCGTACGACATCGCTTCGTGAACTAACCACGCTCGGGATCAAG AACGCGGAGAACCTCGCTATCCCAAGTGTTCGAAACGACGCAGCTTTCCTTTTCACAGTGGTGGGAACAACTGGGTTTCTAGGAGTTCTTGCAGGTCAAC TCCCAGGGGATTGGGGCTTCTTCGTCCCCTACTTAATCGGCAGCATTTCGCTAGTTGTTCTAGCCATTGGAAGCACCGCGCCCGGCCTGGCAGTTGTGGC AATGGCTGGACTAGCTGCAGAAGGTCTGCAGTATGACAAAGTCATCGGTCAATCTGCCGATCTTTTCACCCTTCAGAGGTTCTTCAACAGGAGTAAGCCA ACTCTCAGTAAAGATCAGCAACAAAACCTAACCAGATGGGCAGTTCTGTTTGCAGCATCTCTGCTGAAGAACAACAAGTCACTCCATGAAGCACTAATGA AATCGATGTCAAACAAGGCATCCGTCGTCGAATGCATTGCCGCCATCGAGCAAGCAACTCCCTGA
AA sequence Show only first row Show all	>Lus10006822 pacid=23150741 polypeptide=Lus10006822 locus=Lus10006822.g ID=Lus10006822.BGIv1.0 annot-version=v1.0 MIAIPSTSSMTSSISTTSIAIHRLRIQSVSVAAATSSSSSSSSTIDLKALESAISKKDSNAVKEALDELTKAGWAKQWSSQPYVSRRTTSLRELTTLGIK NAENLAIPSVRNDAAFLFTVVGTTGFLGVLAGQLPGDWGFFVPYLIGSISLVVLAIGSTAPGLAVVAMAGLAAEGLQYDKVIGQSADLFTLQRFFNRSKP TLSKDQQQNLTRWAVLFAASLLKNNKSLHEALMKSMSNKASVVECIAAIEQATP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21960			unknown protein		Lus10006822 [exp]	0	1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	3.5	0.8571
AT3G50685			unknown protein		Lus10014321 [exp]	3.5	0.8612
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	3.9	0.8644
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	5.7	0.8419
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	6.8	0.8633
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	7.4	0.8563
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	7.7	0.8496
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	8.0	0.8309
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	8.4	0.8333
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	14.4	0.8409

Compare expression of checked genes

Lus10006822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.