Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13920 130 / 2e-31 AtRLP50 receptor like protein 50 (.1) AT1G71390 125 / 8e-30 AtRLP11 receptor like protein 11 (.1) AT3G05650 124 / 2e-29 AtRLP32 receptor like protein 32 (.1) AT3G23120 122 / 5e-29 AtRLP38 receptor like protein 38 (.1) AT1G71400 121 / 2e-28 AtRLP12 receptor like protein 12 (.1) AT3G05660 120 / 2e-28 AtRLP33 receptor like protein 33 (.1) AT5G62230 120 / 2e-28 ERL1 ERECTA-like 1 (.1.2) AT5G01890 117 / 2e-27 Leucine-rich receptor-like protein kinase family protein (.1) AT5G49290 117 / 3e-27 ATRLP56 receptor like protein 56 (.1) AT3G49670 117 / 3e-27 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006825 [exp] 416 / 1e-133 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004313 [exp] 365 / 5e-117 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10009330 [exp] 300 / 7e-92 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10004310 [exp] 290 / 6e-88 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10016402 [exp] 276 / 6e-84 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10026415 [exp] 281 / 4e-83 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 280 / 7e-83 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 279 / 2e-82 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10004309 [exp] 252 / 1e-78 AT1G47890 225 / 6e-66 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 261 / 5e-76 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 201 / 6e-55 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120466 [exp] 162 / 8e-47 AT1G47890 73 / 4e-15 receptor like protein 7 (.1) Potri.011G141100 [exp] 169 / 3e-45 AT2G33020 295 / 2e-89 receptor like protein 24 (.1) Potri.016G120532 [exp] 166 / 1e-43 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G437800 [exp] 157 / 3e-41 AT2G32660 314 / 6e-99 receptor like protein 22 (.1) Potri.001G437600 [exp] 157 / 4e-41 AT2G32660 306 / 5e-96 receptor like protein 22 (.1) Potri.011G104600 [exp] 152 / 1e-38 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.012G010300 [exp] 151 / 2e-38 AT3G11080 385 / 3e-118 receptor like protein 35 (.1) Potri.012G010101 [exp] 149 / 8e-38 AT1G45616 379 / 6e-115 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006824 pacid=23150752 polypeptide=Lus10006824 locus=Lus10006824.g ID=Lus10006824.BGIv1.0 annot-version=v1.0 ATGGGCAGCGACCATGTTCTTTTGGTCGCTGGCCGATGCCGAGAAGACCAACAATCCCTACTCCTACAGCTCAAACATGGCCTCAATTTAAGCTATCCAT CATTTTCAAGGGTGATATCATGGAATTCGAGTACGGATTGCTGCGAGTGGCCTGGTATAAGATGTGATCCTAGTGGCCTCGGTCATGTTGTTGGACTTGA CTTGAGTGATTCAATCACCGGAGGAGGTGGACGCGATGATTCCTCGGCTCTGTTTAGTCTCAAATATCTCGAGGAACTGGATTTGTCGTACAACTACTTC AACACAACTATTCCGGCTGCACTTGCCAACCTTACCAATTTGAGGTATCTGAACTTATCAAATGCCGGCTTCTTTGGGCAAATTCCTACAGCCCTCTCTC AACTGTCAAGCTTGGTTAGTTTTCGTTTATCAAATTGGTTTGAGGGTCTACAACTTGAGATTCCAAATCCAACCCTACTCTTTCAAAATCTCACCCAACT AACTGAGCTCCGACTTGATGGCGTGGACTTATCCACTCAAGAGAAGGAGTTGTTCCATGTCTTGTCTTCTTCACTACCAAATCTCAGAGTGTTGAGCTTG ATCAAATGCAACCTTTCAGCCCCTATTGATCCCTCCCTTTCAAAACTTCAGTCTCTAACAAAACTTTACCTTGATTACAACAATTTCTCCTCTTTAATCC CCGATATCATCCAAGATTTCAAAAACTTGACAGCCTTGAGAATGTCAAATTGTGGGCTTAGAGGAACATTCCCAAAAAAGATAGTCCAAAGCCTGACTCA ACTAGAGTATTTGGATTTCTCAGATAACCAATTGGTGGGTAATATACCATATGCTCACTGGGAAAATATTCACAACCTTGTCCAACTTCAAGGTCAAATT CCAGAGTTTTCAGCTAATACTTCTTCGACTCTGTATTCTATAAGCTTGAGTAACAATTCTCTCAATGGAAACATCCCACCATCTTTATTTTCCATTCCGT CATTGAACGATCTTGATCTGTCCGATAACCAACTAGTAGTTTCCATAATCGTGATCAAGGATACGGTTGAATTGGAATTTGTGAAGGTCTTGACCGCATT CAAGTCAATTGATTTGTCACACAACAATTTTGACGGACCAATACCAGAAGTCATCGGAAAATTCAAAGCACTTCGGGTTCTCAACTTGTCTCAGAATGGT TTAATAAGTCAGATCCCATCGGCATTTGGCAACTTGTCAAGTTTGGAGTCTCTAGACCTCTCTGATAACATGCTGAGTGGACATATACCAAAGGAACTAG CGGACTTGACGTTCCTTTCATGCTTAAACCTATCAAATAACCATTTAGTTGGCAGCATCCCAACCGGCAGACAGTTCGATACGTTCGAGAACACTTCGTA TGGAGGTAATCCAAAACTGTGCGGGAAACCTTTGACTGGATCTTGCACTTCACTACTTGATCCGCCGGATGTCATTATTAGACGTGGGAAATCAAATGGA GGAACCGACTGGGACAAGCTTAGCAAAGCATTTGGATATTTGTTTGGCCTAACTGTTGTCATGTTGCCAGCCGCGTTATGGCCAAGTTTTCGAGTTTGGT TCTGGCCGAAGATCGATTCTCTAATCCTTTGGATGTTCCCGAAGCTATATGTAAAAGACTGGAATAATCGTCTTAGGAAAAGACGGAGCCAACGACGCAC CAAGCAAACTGCGACATGCCGGTAA
AA sequence Show only first row Show all	>Lus10006824 pacid=23150752 polypeptide=Lus10006824 locus=Lus10006824.g ID=Lus10006824.BGIv1.0 annot-version=v1.0 MGSDHVLLVAGRCREDQQSLLLQLKHGLNLSYPSFSRVISWNSSTDCCEWPGIRCDPSGLGHVVGLDLSDSITGGGGRDDSSALFSLKYLEELDLSYNYF NTTIPAALANLTNLRYLNLSNAGFFGQIPTALSQLSSLVSFRLSNWFEGLQLEIPNPTLLFQNLTQLTELRLDGVDLSTQEKELFHVLSSSLPNLRVLSL IKCNLSAPIDPSLSKLQSLTKLYLDYNNFSSLIPDIIQDFKNLTALRMSNCGLRGTFPKKIVQSLTQLEYLDFSDNQLVGNIPYAHWENIHNLVQLQGQI PEFSANTSSTLYSISLSNNSLNGNIPPSLFSIPSLNDLDLSDNQLVVSIIVIKDTVELEFVKVLTAFKSIDLSHNNFDGPIPEVIGKFKALRVLNLSQNG LISQIPSAFGNLSSLESLDLSDNMLSGHIPKELADLTFLSCLNLSNNHLVGSIPTGRQFDTFENTSYGGNPKLCGKPLTGSCTSLLDPPDVIIRRGKSNG GTDWDKLSKAFGYLFGLTVVMLPAALWPSFRVWFWPKIDSLILWMFPKLYVKDWNNRLRKRRSQRRTKQTATCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10006824 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10006825 [exp]	1.0	0.9889
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10002059 [exp]	2.0	0.8795
					Lus10000834 [exp]	3.5	0.8702
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	11.4	0.9049
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	14.2	0.8897
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	16.7	0.8543
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	20.0	0.7918
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10037941 [exp]	20.1	0.7913
AT1G45160			Protein kinase superfamily pro...		Lus10005470 [exp]	20.4	0.8751
					Lus10039252 [exp]	20.5	0.6984

Compare expression of checked genes

Lus10006824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.