Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 307 / 1e-88 AtRLP7 receptor like protein 7 (.1) AT4G13920 301 / 1e-87 AtRLP50 receptor like protein 50 (.1) AT3G11010 294 / 8e-85 AtRLP34 receptor like protein 34 (.1) AT1G45616 290 / 8e-83 AtRLP6 receptor like protein 6 (.1) AT3G11080 285 / 2e-81 AtRLP35 receptor like protein 35 (.1) AT2G15080 281 / 1e-79 AtRLP19 receptor like protein 19 (.1.2) AT2G34930 278 / 3e-79 disease resistance family protein / LRR family protein (.1) AT5G27060 273 / 4e-77 AtRLP53 receptor like protein 53 (.1) AT3G05660 267 / 2e-75 AtRLP33 receptor like protein 33 (.1) AT3G05650 264 / 2e-74 AtRLP32 receptor like protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004313 [exp] 867 / 0 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10042239 [exp] 741 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10004310 [exp] 731 / 0 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10026415 [exp] 693 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003389 [exp] 679 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10019693 [exp] 596 / 0 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10016402 [exp] 593 / 0 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10003387 [exp] 499 / 2e-159 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10004309 [exp] 431 / 2e-142 AT1G47890 225 / 6e-66 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 481 / 8e-156 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 471 / 8e-148 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 419 / 4e-129 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 393 / 3e-120 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.001G389100 [exp] 379 / 4e-115 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G126900 [exp] 379 / 7e-115 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 364 / 2e-109 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G127101 [exp] 353 / 1e-105 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.011G055000 [exp] 342 / 4e-102 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.011G104600 [exp] 346 / 3e-101 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006825 pacid=23150770 polypeptide=Lus10006825 locus=Lus10006825.g ID=Lus10006825.BGIv1.0 annot-version=v1.0 ATGCCGAGAAGACCAACAATCCCTACTCCTACAGCTCAAACATGGCCTCAATTTAAGCTATCCATCATTTTCAAGGGTGATATCATGCCGAGAAGACCAA CAATCCCTACTCCTACAGCTCAAACATGGCCTCAATTTAAGCTATCCATCATTTTCAAGGGTGATATCATGCCGAGAAGACCAACAATCCCTACTCCTAC AGCTCAAACATGGCCTCAATTTAAGCTATCCATCATTTTCAAGGGTGATATCATGCCGAGAAGACCAACAATCCCTACTCCTACAGCTCAAACATGGCCT CAATTTAAGCTATCCATCATTTTCAAGGGTGATATCATGCCGAGAAGACCAACAATCCCTACTCCTACAGCTCAAACATGGCCTCAATTTAAGCTATCCA TCATTTTCAAGGGCTCAGAAAATCGACTGGTTGAGTGGAATTCGAGCACGGATTGCTGTGAGTGGCCTGGTATAAAATGTGATCTCAATGGCCTTGGTCG TGTTGTTGGACTCAACTTGAGCTTTGAACAGATAATTGTACGAGGTGGAATCGACGATTCTTCGGCTCTGTTTAGTCTTGGATATCTCGAGGAATTGGAT CTGTCCGACAACTTCTTCAACACAACTATTCCAGGTGCACTTGGCAACCTCATCAATTTGAGGTATCTACACTTATCCGATGCTGGTTTCTATGGTCAAA TTCCAACTGCCATCTCTCAGCTGACAAGCTTGGTTAGTCTTGATTTGTCATATCAAAATCTAAAGATTGAGAGTACAAATCTGGCGCTACTTGTTCAGAA TCTCACAAAATTAACCAAGCTTCGACTTGATGGCGTGGACTTATCCACTCAAGGGAAGGAGTGGTTCCATGTCTTATCTTCTTCACTACCAAATCTCAGA GAGTTGAGCTTGAGCAAATGCAACCTTTCAGCCCCTATGGATGCTCCCTCCCTTTCAAAACTTCAGTCTCTCACGGACCTTTACCTTGATCACAACAATT TCTCCTCTTTAATCCCCGATATCATCCAAGATTTAAAAAACTTGACAGCCTTGAGAATGTCAAATTGTGGGCTTAGAGGAACATTCCCAAAAAAGATAGT CCAAAACCTGACTCAACTAGAGTATTTGGATTTCTCACATAACCAATTGGTGGGTAATATACCATATGCTCACTGGGAAAATATTCACAACCTTGTCCAA GTAGACCTTAGAGACAATTTTTTCAACGGGACCATCCCACCATCTTTATTTTCCATTCCATCTTTGAAAAATATTGATCTCTCCAATAACCAGGTTCAAG GTCAAATTCCAGAGTTTTCAGCTAATACTTCTTCGACTCTGAATTCTATATTCTTGAATAACAATTTTCTCAACGGAAGCATCCCACCATCTTTATTTTC CATTCCATCTTTGAAATATATTGATCTCTCCAATAACCAACTAGTAGGTCCCATCCCCCCTTCAATTTTCGAACTTTCATCACTTCATTCCCTCTTCCTT TCATCTAATAGATTGAGTGGCAAGGTCCAGTTAAGTTGGTTTCAAACACTCCAAAATCTCACTTCCCTTGATCTTTCCTACAACAACCTAACAGTTGATG CAAATATCAATAAATCCTCTACGAGCTCGCCCGTCTTTCCTCAATTAAGACAATTGCATCTTCCATCGTGCAATCTTAGAACAATTCCCGAGTTGGGCAA CCAACTAAGTCTTTCCAACCTAGACCTTTCTGACAACAATATCAATGGGGTAATACCTCGTTGGATTATGGATTCAACTACTTTAATATCCCTCAATCTT TCACACAACAACCTAGTAGGTTTTGAGGTCCAACATTTTGCTTCTACTCCTACATTTTTGGACATGCATGACAACCAACTCCAAGGAAACTTTCCATTCA TTCCATTTCCATTACCATTATTCGACATATGGTACATAGATTTCTCCCACAATCATCTCAATGGTTCCATTCCAGCCCGAATTTTCAACAATCTTTATTT GAACTTTCTTTCACTATCAAATAATAGCTTCACAGGAACTATTCCAACAAGTATGTGTGATGCTGTAAGTCTTGACGTCATTAATCTTTCAAACAACCAT TTGAATGGAACAATCCCATCTTGTCTCATAGAAACCATGAAAGATCTCTCTGTCCTAGATTTGAGTGGGAATATGTTTACTGGCAACATACCAAACACAT TCCATACTTCATGTCGTTTACAAACTCTAAATTTTCACAACAACCAATTACAAGGAACATTTCCGAAGTCCTTGAAGAACTGCACGAAGTTGGAAGTTTT AGACATCGGGAACAACAAAATCGCAGGTCCTTTCCCTTGTCTTCAAGGAGAAATCAAATCTACTTTGCGTGTCCTAATTCTTAGGAACAACCTCTTCCAT GGGAGCATTCAGTGCTCGTATGATGATCAAACTACTTGGCAACAACTCCAAATTGTCGATCTTGCTTCCAACAATTTTTCGGGACCCTTAAATGCCAAAT ACTTAGATTCATTGAAAGTCATGATGGAAGATGTCTTGACCGCATTCAAGTCAATTGATTTGTCACACAACAATTTTGACGGACCAATACCTCAAGTTAT CGGAAAATTCAAAGGACTTCAGGTTCTCAACTTGTCTCAGAATGCTTTAATAAGTCAGATCCCATCAACATTCGTCAACTTGTCAAGGTTGGAGTCTCTA GACCTCTCTGATAACATGCTGAGTGGACATATACCAAAGGAACTAGCGGACTTGACGTTCCTTTCATGCATAAACCTATCAAATAACCATTTAGTTGGCA GCATCCCAACTGGCAGACAATTTGATACGTTCGAGAACACTTCGTATGGAGGTAATCCAAAACTGTGTGGGAAACCTTTGACTAGATCCTGCACTTCACT ACTTGATCCGCCGGATGTCATTATTAGACGTGGGAAATCAAATGGAGGAACCAACTGGGACAAGCTTAGCAAAGCATTTGGCTATTTGTTTGGCCTAACT GTTGTCATGTTGCCAGCTTCGTTATGGCCAAGTTTTCGAGTTTGGTACTGGCCAAAGATCGATTCTCTAATCCTTTGGATGTTCCCAAAGTTATACGTGA AAGACTGGAATAATCGTCTTAGGAAAAGACAAAGCCAACGACGCACCAAGAAAATTGCGACAAGCCGGTAA
AA sequence Show only first row Show all	>Lus10006825 pacid=23150770 polypeptide=Lus10006825 locus=Lus10006825.g ID=Lus10006825.BGIv1.0 annot-version=v1.0 MPRRPTIPTPTAQTWPQFKLSIIFKGDIMPRRPTIPTPTAQTWPQFKLSIIFKGDIMPRRPTIPTPTAQTWPQFKLSIIFKGDIMPRRPTIPTPTAQTWP QFKLSIIFKGDIMPRRPTIPTPTAQTWPQFKLSIIFKGSENRLVEWNSSTDCCEWPGIKCDLNGLGRVVGLNLSFEQIIVRGGIDDSSALFSLGYLEELD LSDNFFNTTIPGALGNLINLRYLHLSDAGFYGQIPTAISQLTSLVSLDLSYQNLKIESTNLALLVQNLTKLTKLRLDGVDLSTQGKEWFHVLSSSLPNLR ELSLSKCNLSAPMDAPSLSKLQSLTDLYLDHNNFSSLIPDIIQDLKNLTALRMSNCGLRGTFPKKIVQNLTQLEYLDFSHNQLVGNIPYAHWENIHNLVQ VDLRDNFFNGTIPPSLFSIPSLKNIDLSNNQVQGQIPEFSANTSSTLNSIFLNNNFLNGSIPPSLFSIPSLKYIDLSNNQLVGPIPPSIFELSSLHSLFL SSNRLSGKVQLSWFQTLQNLTSLDLSYNNLTVDANINKSSTSSPVFPQLRQLHLPSCNLRTIPELGNQLSLSNLDLSDNNINGVIPRWIMDSTTLISLNL SHNNLVGFEVQHFASTPTFLDMHDNQLQGNFPFIPFPLPLFDIWYIDFSHNHLNGSIPARIFNNLYLNFLSLSNNSFTGTIPTSMCDAVSLDVINLSNNH LNGTIPSCLIETMKDLSVLDLSGNMFTGNIPNTFHTSCRLQTLNFHNNQLQGTFPKSLKNCTKLEVLDIGNNKIAGPFPCLQGEIKSTLRVLILRNNLFH GSIQCSYDDQTTWQQLQIVDLASNNFSGPLNAKYLDSLKVMMEDVLTAFKSIDLSHNNFDGPIPQVIGKFKGLQVLNLSQNALISQIPSTFVNLSRLESL DLSDNMLSGHIPKELADLTFLSCINLSNNHLVGSIPTGRQFDTFENTSYGGNPKLCGKPLTRSCTSLLDPPDVIIRRGKSNGGTNWDKLSKAFGYLFGLT VVMLPASLWPSFRVWYWPKIDSLILWMFPKLYVKDWNNRLRKRQSQRRTKKIATSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10006825 [exp]	0	1
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10006824 [exp]	1.0	0.9889
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10002059 [exp]	3.5	0.8787
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	4.6	0.8693
					Lus10000834 [exp]	4.9	0.8669
					Lus10005901 [exp]	5.5	0.8809
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	11.5	0.9007
					Lus10039252 [exp]	11.8	0.7166
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	12.7	0.8628
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	14.0	0.8914
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10037941 [exp]	15.2	0.8042

Compare expression of checked genes

Lus10006825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.