Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 380 / 1e-132 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 317 / 1e-107 ATSEH soluble epoxide hydrolase (.1) AT3G05600 317 / 1e-107 alpha/beta-Hydrolases superfamily protein (.1) AT2G26750 315 / 7e-107 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 298 / 9e-100 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 294 / 4e-99 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 254 / 4e-83 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 54 / 9e-08 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 50 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G53050 48 / 6e-06 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037577 [exp] 630 / 0 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037559 [exp] 577 / 0 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 363 / 4e-126 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 358 / 4e-124 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 354 / 2e-122 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 342 / 2e-117 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 317 / 2e-107 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 311 / 2e-105 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 311 / 4e-105 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 389 / 4e-136 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 379 / 4e-132 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 370 / 2e-128 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 342 / 2e-117 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 341 / 3e-117 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 333 / 2e-114 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 330 / 4e-113 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 287 / 4e-96 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 206 / 1e-64 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 201 / 1e-62 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10006827 pacid=23144390 polypeptide=Lus10006827 locus=Lus10006827.g ID=Lus10006827.BGIv1.0 annot-version=v1.0 ATGGAGGTAACCAACGAAGAGATCCACCACTCCACGATCCAAACCAACGGAATCAAGATGCACATCGCCACCACCGGACCTCCCACCGCGGAATCCACAA TCCTTTTCCTCCACGGATTCCCCGAGCTCTGGTTCGCGTGGCGCCGCCAGCTCCTATCCATCCCTTCCTTAGGCGACTACCGCTGCGTAGCTCCCGACCT CCGCGGCTACGGCGACACCGACGCCCCTCTGTCTCCAGCCAAGTACACCGCCTTCCATATCGTCGGCGACCTTGTCGGCCTCCTCGATTTTCTAGAGATC GAGAAGGTGTTCGTGGTGGGACATGACTGGGGAGCTGCCATGGGTTGGTATTTTGCCAGGTTCCGACCCGATCGGGTCAGGGGAGTGGTTAACCTTAGCG TCCCGCCGACCCGGCAGTCCCCTGTTTCCAATTTCGTTGATGTCTTCAGGGGTGTTTACGGGGATGATTACTATTTCTGCAGGTTTCAGGAAGTGGGAGA AGCAGAGGAAGAATTTGCGAAAGTAGACACAAAGAAACTGATAACAAAGCTGTACACACTCTTCAGCAAACCAGAGCCACCAATGGTGCCCAAAGAAACA GGATTCAAAGGGTTACCAGATCCACCAACCTCATTCCTCCCATGGCTGCCGGAAGAATACGTGGATTACTACGCTTCCAAGTTCAGCAAGACCGGCTTCA CCGGGGGACTCAACTACTACCGAGCCTTCTCCCTCACCAGGGAGCTGATGGGGCCATGGAAAGATTCTAAATACCAAGTCCCAGCTAAGTTCATCATTGG GGATCAAGACGTTTGCTACCACATGCCTGGGATGAAGGACTACATTCACAGCCAAGAGTTCAAGAAGGAAGTCCCGCAGCTCGAGGAAGTAGTGGTCATG GAAGGAGTGCCGCATTTCGCGCACTTGGTCAAGCCGGAAGAGATCACCCAGCACATCGTCGACTTCATCAAACGATTCTGA
AA sequence Show only first row Show all	>Lus10006827 pacid=23144390 polypeptide=Lus10006827 locus=Lus10006827.g ID=Lus10006827.BGIv1.0 annot-version=v1.0 MEVTNEEIHHSTIQTNGIKMHIATTGPPTAESTILFLHGFPELWFAWRRQLLSIPSLGDYRCVAPDLRGYGDTDAPLSPAKYTAFHIVGDLVGLLDFLEI EKVFVVGHDWGAAMGWYFARFRPDRVRGVVNLSVPPTRQSPVSNFVDVFRGVYGDDYYFCRFQEVGEAEEEFAKVDTKKLITKLYTLFSKPEPPMVPKET GFKGLPDPPTSFLPWLPEEYVDYYASKFSKTGFTGGLNYYRAFSLTRELMGPWKDSKYQVPAKFIIGDQDVCYHMPGMKDYIHSQEFKKEVPQLEEVVVM EGVPHFAHLVKPEEITQHIVDFIKRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	0	1
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	4.0	0.9070
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	5.7	0.9225
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	8.3	0.9047
AT1G11770			FAD-binding Berberine family p...		Lus10023365 [exp]	10.4	0.8776
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	10.8	0.9042
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10027019 [exp]	10.9	0.8793
AT2G43590			Chitinase family protein (.1)		Lus10010862 [exp]	11.8	0.8873
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	12.0	0.8910
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039812 [exp]	13.3	0.8892
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10024570 [exp]	19.6	0.8725

Compare expression of checked genes

Lus10006827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.