Lus10006828 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16230 100 / 4e-23 Predicted eukaryotic LigT (.1.2.3)
AT3G16220 52 / 3e-07 Predicted eukaryotic LigT (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037578 350 / 4e-117 AT3G16230 426 / 4e-146 Predicted eukaryotic LigT (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G186600 104 / 3e-24 AT3G16230 479 / 6e-167 Predicted eukaryotic LigT (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10006828 pacid=23144423 polypeptide=Lus10006828 locus=Lus10006828.g ID=Lus10006828.BGIv1.0 annot-version=v1.0
ATGGTCATTTCAAGCTCTCATCTGAGAGTCTACGGTGTCTTCAAGTTCTTGAATTCATACGTCAAGTCGAAGCCGATCATTCACTTTCAGGGTCCGAGGT
TTTGTTACTGCTGCGGGAGCTTTAATGGTGGAATGGCTGGTGGGAAGGATAAATTAGCTGCTCCGGAAAGAAACAAAAGGGCGAAGGCTAACATGCCTGT
GTGGAGACGAGTCTCTACTCATAATGTGAATCTTCACGGAAAAGATGAAGGTCGCAGACAGGAACTGAAGTGCAGCACTTCTAGCTCTATTTCGAGTAAC
CAACCGAATGTAACCAGTGCCAAAGCTGCGGAAACAATGGCTGGCTCATCTGAAGCATCGTCTGCTGGAAACCATTCCGTTTCAATTGAGGTGAAGCTAG
TTCTGTCATACCTGTGGAGACTTTTTCCCCTTGATTTATTTTCGCTTGTTAATATTTTCCTTTATGGTGTTTATGATGGTCTCATTCCCAGAGGATCTAC
GAAGGAAAAGATCGAAGCGGGGATAGGTATTAAGATTATCGTTCCTCCTAGGTCAAAGGAGGAGGAACCTGTCATTATTGAAGGCCCTTCAGTTGCTTGT
GTAACTAGAGCGGCAGAAAAAGTTCAGACGGTTCTTGATGAGGCGGTCAGAAGCCGTAATCTTGACTACTCTCATTTTGTTTCTCTACCTCTGGCTGTAC
ACCCTGAATTGGTTGACAAGCTAGTCAGTTTCCTGGGGAATGATGATAGAATCCGCAACGAAAATGATTCTAGTGAAGATTCCTCTGACAATGATGTCAA
AGATCGAGAAACAAACAAAAAAGTCGAGGAAGGAAACCATGTCAGAGTGGATCGGAGTAATATACCTCTTGTCAGCTGTGCACCCAAAGCATCGCAGGCC
AAAGCATCAAACTCTGGTTCTTCATCTGCTTCCTTAGCTATGGTAGAAATCATCCGTGAGGTGTTTACTGAGGGTGGACTTGTTCTGGAGAAAGATGCTA
ACGAACAGTTAAAGCTGCATGCCACACTGATGAATGCGAGGCATAGGAAAGGGAAGCAAAGGAGAAACATGAACTCGTTCGATGCACGAGGCGCCGTGAA
GCTCTTCGGAGAAGAGGACTGGGCGAGTATCTCATCCGTGAAGCTCATCTCTCGCAATGGTTCGCATACGATGCTAATGGGTACTACCGGTGCTGTGCAT
CAATACCATTGCCAGATCAAGACTAAAAATTCTGCCTGA
AA sequence
>Lus10006828 pacid=23144423 polypeptide=Lus10006828 locus=Lus10006828.g ID=Lus10006828.BGIv1.0 annot-version=v1.0
MVISSSHLRVYGVFKFLNSYVKSKPIIHFQGPRFCYCCGSFNGGMAGGKDKLAAPERNKRAKANMPVWRRVSTHNVNLHGKDEGRRQELKCSTSSSISSN
QPNVTSAKAAETMAGSSEASSAGNHSVSIEVKLVLSYLWRLFPLDLFSLVNIFLYGVYDGLIPRGSTKEKIEAGIGIKIIVPPRSKEEEPVIIEGPSVAC
VTRAAEKVQTVLDEAVRSRNLDYSHFVSLPLAVHPELVDKLVSFLGNDDRIRNENDSSEDSSDNDVKDRETNKKVEEGNHVRVDRSNIPLVSCAPKASQA
KASNSGSSSASLAMVEIIREVFTEGGLVLEKDANEQLKLHATLMNARHRKGKQRRNMNSFDARGAVKLFGEEDWASISSVKLISRNGSHTMLMGTTGAVH
QYHCQIKTKNSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16230 Predicted eukaryotic LigT (.1.... Lus10006828 0 1
Lus10006087 1.4 0.9447
AT1G30140 unknown protein Lus10024751 3.0 0.9455
AT4G10970 unknown protein Lus10023075 4.9 0.9437
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Lus10006230 6.7 0.9339
Lus10040954 7.9 0.9259
AT5G11330 FAD/NAD(P)-binding oxidoreduct... Lus10013122 7.9 0.9159
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10020245 8.5 0.9385
AT1G68940 Armadillo/beta-catenin-like re... Lus10029112 8.8 0.9323
AT1G70650 Ran BP2/NZF zinc finger-like s... Lus10003580 9.7 0.9169
AT2G44270 ROL5 repressor of lrx1 (.1.2) Lus10009739 11.4 0.9257

Lus10006828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.