Lus10006829 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16200 696 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037579 855 / 0 AT3G16200 710 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G051200 709 / 0 AT3G16200 687 / 0.0 unknown protein
Potri.001G186200 698 / 0 AT3G16200 688 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10006829 pacid=23144432 polypeptide=Lus10006829 locus=Lus10006829.g ID=Lus10006829.BGIv1.0 annot-version=v1.0
ATGAAGCATCTACTCAGTCCCAAAGCTCCTCCACCTCCTCAACATTCTTCCTCTTCCCCCGCCGTGGCCGCCGTCGCCGGCAATACAATGCTCGAACGAG
TCGTGTCTTTCCGCCGCTACGCTCCCCACTCCGACGACGCTCCTCCGTCGTCTTCCTCCTCTGACGAGTCCAAGACCAAACCCCCCAATCTCTCATCCTT
GGCCTCCAACTACATCTCCAGGATGTCTCACTCTTCTTTCCACTGCGTCATCTTCGGCCTCCTCCTCTTCGTCCTCGCCTTGATCGCTTCCATCATGTAC
CATTCCCGCACCCTCGTCTGCGTCTCCCGCTTCGATCCCAAGTCCCGCGCTGGATTCTTCGGCATCGACGGCCTCGAGTCCGACTTCGGAGCTCTCGGTG
TTCCCTGGTGCAGATCGAAACAAGGCAAGACAGTTGAGTGGACATCCAAAGATTTGACCAAGGCCCTCGAAGAGTTTGTACCGATTTACGAAACTCGTCC
GATTAAGAACAACATGTACGGAATGGGGTTTGATCATAGCTTTGGCCTTTGGTTCATGGCACGATGGCTGAAGCCGGATCTGATGATTGAGAGTGGTGCT
TTCAAGGGTCATTCAACTTGGGTTCTGCGTCAAGCAATGCCAGATACGCGAATTCTTTCGCTTTCTCCACGACACCCTGAGAAGTACTTAAAGAAGGGCC
CTGCTTATGTCGATGGGAACTGCACCTACTTTGCTGGGAAAGATTTCGTCGATTTTGGAAGTGTTGATTGGAAGAGCGTGATGAAGAAATATGGCATAAC
TGACCTTACAAGGGTCCTTGTCTTTTTTGACGACCATCAGAATGAACTAAAAAGGATAAAGCAGGCGCTGGATGCCGGCTTTCATCATCTTATATTTGAA
GACAATTACGATACCGGGACTGGTGATCATTACTCATTGAGGCAGATTTGTGATCAGTCCTATATAAGAGGTGGTGGGCACAGTTGCTTCAGGGACAGCG
ACGAAGCGCGGATAAGGTCGAAAAGGAAGAAGTTCTGGGAAAAGGCGGTAGACATGGACGAGCTCTGCGGACAGAATGAAGCATGGTGGGGCGTTCGAGG
ATTTATGCGTGACAACTTCAACCACAGTAACAAGATGATATCATACGAAGAACACTTCCAGAACAGCCGGTATATCGAGTCAGTGCTGGATGTTTACTGG
GAGCTCCCGCCCGTGGCAGGTCCTTCCCTCACGCATCAGTCTCGGTACGACCCTGCTCGTGTCTCCAGTCCCATCGTCGAAGATGGCCGGTACGGGTTGT
TCCAGCGGTTGGGGTTAGGTAGGCTCGAAAACTCTGTATTTAACGGGTATACCCAGATGGTATACCTGCAAGTCTCTCAACAATCTTAG
AA sequence
>Lus10006829 pacid=23144432 polypeptide=Lus10006829 locus=Lus10006829.g ID=Lus10006829.BGIv1.0 annot-version=v1.0
MKHLLSPKAPPPPQHSSSSPAVAAVAGNTMLERVVSFRRYAPHSDDAPPSSSSSDESKTKPPNLSSLASNYISRMSHSSFHCVIFGLLLFVLALIASIMY
HSRTLVCVSRFDPKSRAGFFGIDGLESDFGALGVPWCRSKQGKTVEWTSKDLTKALEEFVPIYETRPIKNNMYGMGFDHSFGLWFMARWLKPDLMIESGA
FKGHSTWVLRQAMPDTRILSLSPRHPEKYLKKGPAYVDGNCTYFAGKDFVDFGSVDWKSVMKKYGITDLTRVLVFFDDHQNELKRIKQALDAGFHHLIFE
DNYDTGTGDHYSLRQICDQSYIRGGGHSCFRDSDEARIRSKRKKFWEKAVDMDELCGQNEAWWGVRGFMRDNFNHSNKMISYEEHFQNSRYIESVLDVYW
ELPPVAGPSLTHQSRYDPARVSSPIVEDGRYGLFQRLGLGRLENSVFNGYTQMVYLQVSQQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16200 unknown protein Lus10006829 0 1
AT3G16200 unknown protein Lus10037579 1.7 0.9319
AT3G17440 ATNPSN13, NPSN1... novel plant snare 13 (.1.2) Lus10018338 2.0 0.9334
AT3G12110 ACT11 actin-11 (.1) Lus10004956 2.2 0.9411
AT5G61790 CNX1, ATCNX1 calnexin 1 (.1) Lus10032521 4.9 0.9272
AT1G48480 RKL1 receptor-like kinase 1 (.1) Lus10004040 4.9 0.9263
AT1G50010 TUA2 tubulin alpha-2 chain (.1) Lus10031032 5.2 0.9236
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Lus10032817 5.9 0.9295
AT1G63000 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-... Lus10006719 6.0 0.9301
AT3G12110 ACT11 actin-11 (.1) Lus10005457 8.8 0.9271
AT1G71070 Core-2/I-branching beta-1,6-N-... Lus10010887 9.5 0.9229

Lus10006829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.