Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17070 429 / 1e-141 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G42330 389 / 2e-127 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000930 [exp] 564 / 0 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002252 [exp] 373 / 7e-123 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043200 [exp] 498 / 1e-170 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.013G076000 [exp] 496 / 2e-167 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain CL0449 [flax] [poplar] PF07842 [flax] [poplar] GCFC GC-rich sequence DNA-binding factor-like protein
Representative CDS sequence Show only first row Show all	>Lus10006830 pacid=23144400 polypeptide=Lus10006830 locus=Lus10006830.g ID=Lus10006830.BGIv1.0 annot-version=v1.0 ATGGGGTACACGGCGGGAGGGGGATTGGAGAAGAACGAGCAAGGTATTGTTGTTCCAATCGAAGTGAAGATGATGCCGAAGAAAATCGGGCTAGGATCAA CGACTGTAAAGAGAAGAAGTGGATCAAGGGGAAGAAAAAGAAAGCAAAGCGCTATGTTAATGTTACTGCCAAGAAGCTCTTGGATCAGAAAAGAAGAGGC AATTAGGAACGGTGGTGATATTCGGATGCCGGGGATTCTGTACAATGTCAGGTTGATTGTGAACTTGTTAGAGGCTGATCTTCAGAAAATCGACAGTGAA TTGACGAGACTGAGGGATGCAAGGGATGCAACAATTGGATTGAAGATGGAGAAGGAGAAGTTGGAGAAAGATGCTTCACTCGGAAAGCAGCAACTGGATA ACATGAAGGAGATCATGAGCGTCTTAACCTGTATCGAATTTCAGAATTTGTTAGGATCTCTGACCTTGGATAGTCTTGGTTCATGCTTTACCGAGCTGAG GTTGAAATTTGCAGACGAGTATAAGATGGCCAACTTGCCTTCCATTGCGTGCTTGTTTGGTTTGCCTTTGTTTATCAGAGTGTTTCAAGGATGGGATCCT TTGAGAGATCCAATGCACGGATATAAACTGATCGAGTCGTGGAAAACTCTACTTCAAGGCAATGATGATACGCCTTATGCAGAGTTAGTCTCGGAAGTAG TCTTGCCGGGTATGAATACTTGGGAGCCAAGGGAACCTGAGACGATGCTTACATTTCTCGAGACATGGGCGAACCTGTTGCCACTTCCAGTTTTTCACAC CATATTGGATCAAATAGTCCTGCCAAAGTTGTCAACTGGTGTGGACTCGTGGGATCCTCGCCGAGAGACTGTACCCAGTGTTTGGGTGCATCCATGGCTA CCTCTACTGGGGCCAAAGCTGGAGGGATTATACGAAACAATCCGGATGAAGCTGAGTATGATTCTCGATGCCTGGCACCTGTCTGATGCATCAGTCTACG CTATCTTGTCATCATGGAAAACTGATTTCGATGCTGTAAGTTGGGAGAATCTGATGCGGAGATACATTGTTCCGAAACTGGAGGTTGCTCTTGAAGGGTT CGAGATAAACCCGGAAAGTCAAAGCCTAGATCGGTTCGATTGGGTCGTGTCGTGGGCTTCGGCTCTTCCAATTCATATTATGGTCGACTTGATGGAAAGG TTCTTTTTTGTCAAGTGGCTACAGGTTTTGTATCACTGTCTTGGTACCAACCCGAACCTGCAGGAAGTTCGTAAATGGTATACGGGTTGGAAGGGGATTT TCCCGCCGGAACTTCAGGCACACGAAAAGCTGGAGCCAAAGCTGGAGGGATTATTCGACACAATCCGGATGAAGCTGAGTATGATTCTCGATGCCTGGCA CCCGTCTGATGCATCAGTCTACTCTATCTTGTCATCATGGAAAACTGATTTCAATGCTGTAAGTTGGGAGAATCTGATGCGGAGATACATATTTCCGAAA TTGGAGGTTGCTCTTGAAAGGTTCGAGATAAATCCGGAAAGTCAAAGCCTTGATCGGTTAGATTGGATCGTGTCGTGA
AA sequence Show only first row Show all	>Lus10006830 pacid=23144400 polypeptide=Lus10006830 locus=Lus10006830.g ID=Lus10006830.BGIv1.0 annot-version=v1.0 MGYTAGGGLEKNEQGIVVPIEVKMMPKKIGLGSTTVKRRSGSRGRKRKQSAMLMLLPRSSWIRKEEAIRNGGDIRMPGILYNVRLIVNLLEADLQKIDSE LTRLRDARDATIGLKMEKEKLEKDASLGKQQLDNMKEIMSVLTCIEFQNLLGSLTLDSLGSCFTELRLKFADEYKMANLPSIACLFGLPLFIRVFQGWDP LRDPMHGYKLIESWKTLLQGNDDTPYAELVSEVVLPGMNTWEPREPETMLTFLETWANLLPLPVFHTILDQIVLPKLSTGVDSWDPRRETVPSVWVHPWL PLLGPKLEGLYETIRMKLSMILDAWHLSDASVYAILSSWKTDFDAVSWENLMRRYIVPKLEVALEGFEINPESQSLDRFDWVVSWASALPIHIMVDLMER FFFVKWLQVLYHCLGTNPNLQEVRKWYTGWKGIFPPELQAHEKLEPKLEGLFDTIRMKLSMILDAWHPSDASVYSILSSWKTDFNAVSWENLMRRYIFPK LEVALERFEINPESQSLDRLDWIVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17070			GC-rich sequence DNA-binding f...		Lus10006830 [exp]	0	1
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	5.3	0.9111
AT5G11680			unknown protein		Lus10020200 [exp]	9.6	0.9144
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	15.7	0.9101
AT1G03290			unknown protein		Lus10028005 [exp]	16.2	0.9062
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	26.3	0.9094
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	26.4	0.9081
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031195 [exp]	26.8	0.9095
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	28.2	0.8867
AT2G32090			Lactoylglutathione lyase / gly...		Lus10006122 [exp]	35.7	0.9071
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	39.9	0.8903

Compare expression of checked genes

Lus10006830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.