Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79810 477 / 2e-170 PEX2, TED3, ATPEX2 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037580 [exp] 607 / 0 AT1G79810 508 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051500 [exp] 498 / 2e-178 AT1G79810 503 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2) Potri.001G186000 [exp] 489 / 2e-175 AT1G79810 490 / 2e-175 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF04757 [flax] [poplar] Pex2_Pex12 Pex2 / Pex12 amino terminal region
Representative CDS sequence Show only first row Show all	>Lus10006832 pacid=23144392 polypeptide=Lus10006832 locus=Lus10006832.g ID=Lus10006832.BGIv1.0 annot-version=v1.0 ATGGTCAGTAGTTCCACGCCACCGCCTGACGAATGGCGACGCGCGCACCAACGGTTGCTTCCTCAATCGGAGTCCCTCGCTTCTTCTGTGGGACAGCCTC AGTTGCCGATCTCGATTTCTAGGGTTAACCAATTCGACGCCGGGAGGCTGGATGTTGAAATGTCGGCTATGTTGAAGGAACAGCTGGTTAAGGTCTTCTC ACTAATGAAGCCAGGGATGTTGTTTCAATATGAGCCGGAACTTGATGCATTCCTCGAGTTTCTGATTTGGAGATTCTCTATTTGGGTAGATAAGCCTACT CCTGGGAATGCTCTTATGAATCTGAGGTATCGAGATGAAGGTGCTCGCCAACTTAGAGGCAAATTGAGAACAGGCTTGGAAGGACCTGGACTTACGACTT GTCAGAAACTGTGGTATTGCATTGCTACTGTAGGTGGTCAGTACTTCTGGGCACGCTTACAATCGTTCTCTGCATTTCGTAGATGGGGCGACTCTCAACA GCGACCATTGGCACGTAGAGCTTGGGTTTTAATACAACACATTGAAGGACTTTATAAAGCAGCTTCTTTCGCAAACCTAGCCTTATTTCTTTACACTGGA AGGTTCAGAAATCTTGTCGAAAGAATTTTAAAAGCCAGGCTTGTGTATGGAAACCCCAATATGAATAGAGCTGTTAGCTTCGAGTACATGAATCGCCAAC TAGTCTGGAACGAATTTTCAGAGATGCTATTGTTACTCCTTCCTCTTCTCAACTCATCATCCTTCAAAAGCCTATTTAGCCCATTCTCAAAGAACAAGTC TTCAAGTTCCACGGAAGACGATGGTTCTTGCCCGATATGCCAGGCGACTCCATCGATCCCGTTTCTTGCTCACCCCTGTCAGCATAGGTACTGCTACTAC TGTCTAAGAACACGCTGCGCAGCTTCCCCATCGTTCCGGTGTCCCAGATGCAACGAGCCCGTGGCTGCAATGCAGCAAGATGGTTTGATTAGCAACACTC GTAGCGATCGATAG
AA sequence Show only first row Show all	>Lus10006832 pacid=23144392 polypeptide=Lus10006832 locus=Lus10006832.g ID=Lus10006832.BGIv1.0 annot-version=v1.0 MVSSSTPPPDEWRRAHQRLLPQSESLASSVGQPQLPISISRVNQFDAGRLDVEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDKPT PGNALMNLRYRDEGARQLRGKLRTGLEGPGLTTCQKLWYCIATVGGQYFWARLQSFSAFRRWGDSQQRPLARRAWVLIQHIEGLYKAASFANLALFLYTG RFRNLVERILKARLVYGNPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSFKSLFSPFSKNKSSSSTEDDGSCPICQATPSIPFLAHPCQHRYCYY CLRTRCAASPSFRCPRCNEPVAAMQQDGLISNTRSDR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10006832 [exp]	0	1
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10018832 [exp]	7.7	0.7369
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	17.7	0.6467
AT2G21080			unknown protein		Lus10036448 [exp]	29.0	0.7066
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	29.7	0.7104
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	36.5	0.6460
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	39.1	0.6928
					Lus10030338 [exp]	46.5	0.6146
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	51.6	0.6178
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	59.0	0.6362
AT5G26620			unknown protein		Lus10031447 [exp]	61.3	0.6336

Compare expression of checked genes

Lus10006832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.