Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16190 295 / 4e-103 Isochorismatase family protein (.1) AT5G23220 62 / 9e-12 NIC3 nicotinamidase 3 (.1) AT5G23230 61 / 9e-12 NIC2 nicotinamidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037581 [exp] 382 / 2e-137 AT3G16190 298 / 2e-104 Isochorismatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051700 [exp] 324 / 1e-114 AT3G16190 269 / 6e-93 Isochorismatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00857 [flax] [poplar] Isochorismatase Isochorismatase family
Representative CDS sequence Show only first row Show all	>Lus10006833 pacid=23144403 polypeptide=Lus10006833 locus=Lus10006833.g ID=Lus10006833.BGIv1.0 annot-version=v1.0 ATGGCGGGGAAATGGAAGCAAACAGCTCTCTTAGTCATCGACATGCAGAATGATTTCATCTTGGATGGTTCGCCGGTGACAGTCGCCGGAGGGAAAGCTA TTGTACCAAACGTGATCAAAGCCGTTGAAATCGCTCGGCAGCGTGGAATCCTCGTTGTTTGGGTGGTTCGAGAACACGATCTCCAAGGTAGAGACGTGGA GGTTTTCCGTCGCCATTTGTACTCGTCGGGAGGGAATGCCGGCCCCACCACCAAAGGGAGTGTAGGTGCAGAGCTGGTTGATGGGCTTGTGATCAAAGAA GGAGACTACAAGGTTGTGAAGACGAGGTTTAGTGCATTCTTCGCCACGCATCTTCATTCGTTTCTCAAGACCGAAGGGATTGAGAATCTGGTAGTTATCG GAGTTCAGACTCCAAACTGTATCAGGCAGACTGTGTTTGATGCTGTAGCGCAGGATTACCTGTCGGTTTCGGTCATCTTGGATGCTACTGCAGCTGCAAC CCCTGAGGTGCATCAAGCTAATATATTCGACATGAAGAATGTCGGAGTTGCGACTCCGACATTGCAGGAGTGGTCTGATGCTTGA
AA sequence Show only first row Show all	>Lus10006833 pacid=23144403 polypeptide=Lus10006833 locus=Lus10006833.g ID=Lus10006833.BGIv1.0 annot-version=v1.0 MAGKWKQTALLVIDMQNDFILDGSPVTVAGGKAIVPNVIKAVEIARQRGILVVWVVREHDLQGRDVEVFRRHLYSSGGNAGPTTKGSVGAELVDGLVIKE GDYKVVKTRFSAFFATHLHSFLKTEGIENLVVIGVQTPNCIRQTVFDAVAQDYLSVSVILDATAAATPEVHQANIFDMKNVGVATPTLQEWSDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	0	1
AT5G24460			unknown protein		Lus10032931 [exp]	1.0	0.8716
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	3.0	0.8465
					Lus10018325 [exp]	3.2	0.8325
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	5.3	0.8569
AT4G23330			unknown protein		Lus10032266 [exp]	10.2	0.7959
AT5G10550		GTE2	global transcription factor gr...		Lus10020471 [exp]	10.9	0.8048
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	11.6	0.8263
AT1G29530			unknown protein		Lus10015254 [exp]	12.0	0.8032
					Lus10039856 [exp]	12.0	0.8139
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	12.2	0.7728

Compare expression of checked genes

Lus10006833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.