Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16175 101 / 5e-28 Thioesterase superfamily protein (.1) AT2G29590 73 / 7e-17 Thioesterase superfamily protein (.1) AT1G52191 71 / 3e-16 Thioesterase superfamily protein (.1) AT1G04290 56 / 2e-10 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037582 [exp] 235 / 7e-80 AT3G16175 86 / 5e-21 Thioesterase superfamily protein (.1) Lus10037583 [exp] 230 / 1e-78 AT3G16175 107 / 4e-30 Thioesterase superfamily protein (.1) Lus10006837 [exp] 190 / 1e-62 AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1) Lus10018205 [exp] 76 / 7e-18 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1) Lus10040701 [exp] 73 / 1e-16 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10004288 [exp] 71 / 7e-16 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1) Lus10019228 [exp] 68 / 8e-15 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051900 [exp] 156 / 2e-49 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1) Potri.004G134066 [exp] 67 / 9e-15 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 64 / 2e-13 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1) Potri.009G042100 [exp] 61 / 2e-12 AT2G29590 177 / 8e-58 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006834 pacid=23144433 polypeptide=Lus10006834 locus=Lus10006834.g ID=Lus10006834.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGAAGACACAGTGGCGGTAGCAAACAGAGAGCTGGGAGAGCGTTTGGAAGGCTTGTACAAAACTCTGGAATCCATATCCATGAAAGGCA TCCGGATCGTCGAGTCCCGTAAAGGATTCCTTCGCTGCCGCTTCGTCGTCTCCGATCGCATTACCGATGGAGATGGGAATTGGCACGTCGGAGCGATGAC GACTCTGATTGATGTTGTGAGCCTCTTTGCGATTTACAGCGTCGTCGGCCATGTGAAAGCCTCCGTCGATTTCAACGTCTCTTTCTTCTCCACGGCCAAA GCTCTGGAGGAGGTGGAGTTGGAAGGAAAGGTAGTTAGAGAAAAGGGAAAGCTAGGGTCAGTGGTGATAGAGGTTACAAGGACACGTAATGGAGAGCTCA TCGCCTTGGGTAAACAATGGATGTATGCCCAGAACAAACGTGTCCACTCTTCAAGCAAGCTTTGA
AA sequence Show only first row Show all	>Lus10006834 pacid=23144433 polypeptide=Lus10006834 locus=Lus10006834.g ID=Lus10006834.BGIv1.0 annot-version=v1.0 MAEEEDTVAVANRELGERLEGLYKTLESISMKGIRIVESRKGFLRCRFVVSDRITDGDGNWHVGAMTTLIDVVSLFAIYSVVGHVKASVDFNVSFFSTAK ALEEVELEGKVVREKGKLGSVVIEVTRTRNGELIALGKQWMYAQNKRVHSSSKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16175			Thioesterase superfamily prote...		Lus10006834 [exp]	0	1
AT3G02220			unknown protein		Lus10019392 [exp]	5.0	0.7960
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	6.3	0.7565
					Lus10012012 [exp]	6.9	0.7699
AT2G15220			Plant basic secretory protein ...		Lus10013860 [exp]	8.1	0.6773
AT2G28105			unknown protein		Lus10021424 [exp]	8.9	0.7627
					Lus10027007 [exp]	10.4	0.7262
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	10.5	0.7701
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10043187 [exp]	10.6	0.7478
					Lus10038255 [exp]	17.2	0.7435
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	17.5	0.7305

Compare expression of checked genes

Lus10006834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.