Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006838 [exp] 549 / 0 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 412 / 1e-144 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 398 / 2e-139 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 393 / 6e-137 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 382 / 5e-133 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 343 / 1e-117 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 277 / 9e-93 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017883 [exp] 195 / 8e-60 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 192 / 7e-59 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 396 / 8e-139 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 228 / 6e-73 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 222 / 2e-70 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10006835 pacid=23144394 polypeptide=Lus10006835 locus=Lus10006835.g ID=Lus10006835.BGIv1.0 annot-version=v1.0 ATGGCAGCCAGCTTCTTCAAGGAAATCGAGGTCCCGAATCAAAAGGTGCACCATGGCAGGAACTTCCCCTCGCCGTTCCCCGTCGCCCTGGCGCCTGCGT TTCCCTCCGCCGATCTCGCTTCCGGTATTGAATCTCACAAGCAGTACCTGGATTCTCTGCTTCAGAAAACAGGGGCGATCCTCTTCAGGGGATTCCCTCT CTCCACGGCTTCGCAGTTCGATGCGGTGGTGGAAGCGTTCGGATACGCCGACCAACCTTACGTCGGCGGACCCGCCACCCGGACCCACGTCGTCGGCCGC GTCTTCACCTCCAATGAGTCCCCGCCCGACAAGAAGATCCCTTTCCATCACGAGATGGCTTATGCGTCGGAGTTTCCGAGGAAGGTGTTCTTCTTCTGCG AAGTGGAGCCTGGAAGCGGCGGCGAAACGCCGATCGTGTTGAGCTATATGATCTACGAGAGGATGGAAAAGAAGTATCCGGAGTTTGTGACGAAGCTGGA AAAGGAAGGGCTGATTTTCAAAAGAGTGATTACCGGAGAAGACGACCCATCTTCCGCCGTCGGCCGTGGCTGGAAGTCTACGTTTTCGTATTCTTCGTTT TCTACTAATGACAGAGTCGTTGCTCAGGAAAGAGCCAAAAAGCTAGGAATGAAGCTGGAGTGGATCGACGGAACCGAACATTCACTAGCCGTAAAATCAA TCGGTCCGATCCCGGCATTCAAACAAGACGAGACGATGCCGGATCGCAAGATTTGGTGGAACAATTTGGTCACGAACTATACGGCGTTTGGCAATGAACT AAACGACCCGACAAAGGTGGTCACGTTTGGCAACGGGGAGCCTCTGCCCGACCACGCAGTTTACGGGTGTGAGAAGATCATGGACGAGGAAAGCGTTGCT ATTCCTTGGGAGAAAGGCGACGTTCTGTTGTTGAATAACTTGGCCGTTCAACATGCTCGAAAGCTCTTCGTGCCTCCTCGTCGAGTCTTGGCCGCACTCT GCAAGTAG
AA sequence Show only first row Show all	>Lus10006835 pacid=23144394 polypeptide=Lus10006835 locus=Lus10006835.g ID=Lus10006835.BGIv1.0 annot-version=v1.0 MAASFFKEIEVPNQKVHHGRNFPSPFPVALAPAFPSADLASGIESHKQYLDSLLQKTGAILFRGFPLSTASQFDAVVEAFGYADQPYVGGPATRTHVVGR VFTSNESPPDKKIPFHHEMAYASEFPRKVFFFCEVEPGSGGETPIVLSYMIYERMEKKYPEFVTKLEKEGLIFKRVITGEDDPSSAVGRGWKSTFSYSSF STNDRVVAQERAKKLGMKLEWIDGTEHSLAVKSIGPIPAFKQDETMPDRKIWWNNLVTNYTAFGNELNDPTKVVTFGNGEPLPDHAVYGCEKIMDEESVA IPWEKGDVLLLNNLAVQHARKLFVPPRRVLAALCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	0	1
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	1.4	0.9765
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	2.8	0.9752
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	3.2	0.9762
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	3.5	0.9712
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	3.5	0.9756
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	4.2	0.9649
AT1G09440			Protein kinase superfamily pro...		Lus10030863 [exp]	5.8	0.9529
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	5.9	0.9687
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	6.2	0.9633
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	6.6	0.9511

Compare expression of checked genes

Lus10006835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.