Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16590 242 / 4e-81 REV7, ATREV7 DNA-binding HORMA family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037584 [exp] 341 / 3e-120 AT1G16590 209 / 6e-69 DNA-binding HORMA family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G439000 [exp] 265 / 4e-90 AT1G16590 300 / 1e-104 DNA-binding HORMA family protein (.1) Potri.011G142501 [exp] 78 / 1e-18 AT1G16590 106 / 5e-30 DNA-binding HORMA family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0651 [flax] [poplar] Mad2 PF02301 [flax] [poplar] HORMA HORMA domain
Representative CDS sequence Show only first row Show all	>Lus10006836 pacid=23144421 polypeptide=Lus10006836 locus=Lus10006836.g ID=Lus10006836.BGIv1.0 annot-version=v1.0 ATGGAGAACAGAGATCAACAGTCCACAGAAATGGAGATCAAAGAGAATCAAGCTACCGGAATGGAGAGCGGAGATAATGAATCCACCGACGAGGAGATCG CTAGGATTCTGGTTGAGTTCCTGGAAGTTGCAATCACGTCAATCATTTTCCTCAAAAGGGTATACCCTGCCGGCGCATTTGAGCGGAGGAGGTATATGAA CGCGGTGGTTCAGATAGCTAAGGAGCCACTGCTCCGAGATTACATCCACTCTTCCGTTGCCGCTCTTTTTCCTTTCATCGAAAAGGGTTTGGTGGATAGA GTGGCAGTGGTCTTTTTCAACAAAGATGACAATGTGGTGATCGAGCAATTCATATTCAAGCTAAGGATGAACTTGTCATCTGGAACGAAGGTTGGAGAGG CTGATCTTGAGTTTGCACTCCGGGCATTGTTGATCAAACTCCCCGCCTCGGAATCCCTCACCAAACCTCTTCCTCCTGGTAACGGGTCACATCCTGATCC CAACATCAGCACCATTGAACCCAAGGGGGTTGTAGATTGCAGGTGGGAGATAACAGCTTACTTCAGGAAGCTTCCTGAGTTTGGAACGAGCGATGCTGCA GATGTGTGGATCCCGACTGATACAAAGAAGTTGGAACAGCCTCCTCCGCTAATTACTCCAATCAAGTCTATGAACAGCCATCCTTTGTCTCTGCAGCTGT ATGTGGAACATCCCAATCCATCTGATCCAAAGGGTGTGCCTGAATCTTACATATGA
AA sequence Show only first row Show all	>Lus10006836 pacid=23144421 polypeptide=Lus10006836 locus=Lus10006836.g ID=Lus10006836.BGIv1.0 annot-version=v1.0 MENRDQQSTEMEIKENQATGMESGDNESTDEEIARILVEFLEVAITSIIFLKRVYPAGAFERRRYMNAVVQIAKEPLLRDYIHSSVAALFPFIEKGLVDR VAVVFFNKDDNVVIEQFIFKLRMNLSSGTKVGEADLEFALRALLIKLPASESLTKPLPPGNGSHPDPNISTIEPKGVVDCRWEITAYFRKLPEFGTSDAA DVWIPTDTKKLEQPPPLITPIKSMNSHPLSLQLYVEHPNPSDPKGVPESYI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	0	1
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	1.4	0.7702
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10004490 [exp]	9.3	0.7689
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10012325 [exp]	10.6	0.6950
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	12.7	0.6956
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10015115 [exp]	13.3	0.7029
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	13.4	0.6976
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	14.1	0.6918
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10007924 [exp]	16.0	0.6500
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	17.5	0.6814
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	20.2	0.7069

Compare expression of checked genes

Lus10006836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.